CRO_T002206's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T002206 | Nucleotide-diphospho-sugar transferases superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G55830 | 2.00E-104 | EPC1|ECTOPICALLY PARTING CELLS |
| Arabidopsis thaliana | AT5G04500 | 2.00E-21 | glycosyltransferase family protein 47 |
| Arabidopsis thaliana | AT1G80290 | 5.00E-17 | Nucleotide-diphospho-sugar transferases superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001477 | urate degradation to allantoin I formation of glycosidic bonds, GlycosylTransferases: GTnc glycosaminoglycan biosynthetic process protein homooligomerization heparan sulfate proteoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Lysosome regulation of translational initiation formation of translation preinitiation complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex clathrin adaptor complex eukaryotic translation initiation factor 3 complex vesicle-mediated transport RNA transport translation initiation factor activity heterocyclic compound binding organic cyclic compound binding | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T002206 | scaffolds.min_1000bp | scaffold_3047778 | 28674 | 32887 | - |
Gene detail image
| Genome: |
| CRO_T002206 |
| CDS: |
| CRO_T002206 |
| Transcript: |
| CRO_T002206 |
| Protein: |
| CRO_T002206 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0001888 | glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | molecular_function |
| GO:0006024 | glycosaminoglycan biosynthetic process | biological_process |
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0050508 | glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT64 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09258.7 | Glyco_transf_64 | 167 | 418 | 1.7e-78 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 17.64645 | |
| SRR122236 | mixed tissue RA CK | 67.6801 | |
| SRR122237 | mixed tissue RB CK | 64.5828 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.94499 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 9.6422 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 7.3544 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 5.81636 | |
| SRR122242 | callus MeJA 100um 0h | 7.22922 | |
| SRR122246 | callus MeJA 100um 6h | 7.64993 | |
| SRR122240 | callus MeJA 100um 12h | 6.96793 | |
| SRR122241 | callus MeJA 100um 24h | 6.84105 | |
| SRR122239 | flower CK 1 | 14.9267 | |
| SRR1271859 | flower CK 2 | 9.32028 | |
| SRR1144633 | healthy flowers CK | 17.8877 | |
| SRR1144634 | flowers PnWB infected | 27.18385 | |
| SRR122257 | hairy root CK | 24.5536 | |
| SRR122258 | hairy root MeJA 250um CK | 27.1442 | |
| SRR122259 | hairy root MeJA 250um 24h | 23.974 | |
| SRR122256 | hairy root RebH F CK | 23.7272 | |
| SRR122255 | hairy root TDCi CK | 17.6448 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 24.3244 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 17.1086 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 26.4346 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 24.235 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 20.7915 | |
| SRR1820238 | Hairy roots CK GUS 3 | 23.3351 | |
| SRR1820233 | Hairy roots CK GUS 4 | 23.7492 | |
| SRR1820326 | Hairy roots CK GUS 5 | 22.68235 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 11.8087 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 19.1181 | |
| SRR122252 | immature leaf CK | 13.0517 | |
| SRR342023 | leaf CK 1 | 15.0672 | |
| SRR342022 | leaf CK 2 | 15.48115 | |
| SRR342019 | leaf CK 3 | 18.04565 | |
| SRR342017 | leaf CK 4 | 17.15365 | |
| SRR1271857 | leaf CK 5 | 11.2539 | |
| SRR122251 | mature leaf CK | 15.3799 | |
| SRR648705 | root CK 1 | 37.783 | |
| SRR1271858 | root CK 2 | 11.57985 | |
| SRR122254 | root CK 3 | 25.373 | |
| SRR648707 | root MeJA 24h | 37.31425 | |
| SRR648709 | root MeJA 24h DSN normalized | 34.12575 | |
| SRR837772 | seedling CK | 17.1194 | |
| SRR122243 | sterile seedlings AE CK 1 | 18.8363 | |
| SRR122245 | sterile seedlings AE CK 2 | 14.6353 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 17.7306 | |
| SRR122253 | stem CK | 23.9283 | |
| SRR646572 | shoots CK | 23.93495 | |
| SRR647068 | shoots MeJA 6h 1 | 24.35555 | |
| SRR646596 | shoots MeJA 6h 2 | 24.65815 | |
| SRR646604 | shoots MeJA 24h | 21.4117 | |
| SRR924147 | suspension cells EX ORCA2 CK | 27.19215 | |
| SRR924148 | suspension cells EX ORCA3 CK | 33.2653 |