CRO_T002809's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T002809 | Plant protein of unknown function (DUF827) |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G26570 | 0 | WEB1|WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 |
| Arabidopsis thaliana | AT2G26570 | 0 | WEB1|WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 |
| Arabidopsis thaliana | AT1G45545 | 3.00E-111 | Plant protein of unknown function (DUF827) |
| Arabidopsis thaliana | AT1G12150 | 6.00E-07 | Plant protein of unknown function (DUF827) |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T025215 CRO_T002809 CRO_T002809 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000907 | ruffle membrane regulation of ruffle assembly amino acid import Transcription_related, Transcription factor: WRKY response to starvation | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T002809 | scaffolds.min_1000bp | scaffold_3061966 | 22128 | 25992 | + |
Gene detail image
| Genome: |
| CRO_T002809 |
| CDS: |
| CRO_T002809 |
| Transcript: |
| CRO_T002809 |
| Protein: |
| CRO_T002809 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05701.8 | WEMBL | 381 | 948 | 3.4e-250 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 14.6131 | |
| SRR122236 | mixed tissue RA CK | 24.1547 | |
| SRR122237 | mixed tissue RB CK | 23.6793 | |
| SRR122250 | callus YE 0.3mg/ml CK | 34.941 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 32.2899 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 32.9652 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 33.2955 | |
| SRR122242 | callus MeJA 100um 0h | 37.8785 | |
| SRR122246 | callus MeJA 100um 6h | 37.8589 | |
| SRR122240 | callus MeJA 100um 12h | 45.39 | |
| SRR122241 | callus MeJA 100um 24h | 36.6689 | |
| SRR122239 | flower CK 1 | 42.277 | |
| SRR1271859 | flower CK 2 | 58.0003 | |
| SRR1144633 | healthy flowers CK | 34.15545 | |
| SRR1144634 | flowers PnWB infected | 25.06275 | |
| SRR122257 | hairy root CK | 34.4966 | |
| SRR122258 | hairy root MeJA 250um CK | 33.2894 | |
| SRR122259 | hairy root MeJA 250um 24h | 46.4725 | |
| SRR122256 | hairy root RebH F CK | 27.5188 | |
| SRR122255 | hairy root TDCi CK | 30.4351 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 36.3335 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 53.3937 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 38.262 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 37.4792 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 39.0067 | |
| SRR1820238 | Hairy roots CK GUS 3 | 44.7572 | |
| SRR1820233 | Hairy roots CK GUS 4 | 38.2562 | |
| SRR1820326 | Hairy roots CK GUS 5 | 43.0462 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 51.5864 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 32.4887 | |
| SRR122252 | immature leaf CK | 20.9274 | |
| SRR342023 | leaf CK 1 | 17.1703 | |
| SRR342022 | leaf CK 2 | 16.6459 | |
| SRR342019 | leaf CK 3 | 16.84465 | |
| SRR342017 | leaf CK 4 | 17.75795 | |
| SRR1271857 | leaf CK 5 | 36.2392 | |
| SRR122251 | mature leaf CK | 34.5521 | |
| SRR648705 | root CK 1 | 21.2775 | |
| SRR1271858 | root CK 2 | 26.9287 | |
| SRR122254 | root CK 3 | 28.544 | |
| SRR648707 | root MeJA 24h | 24.55105 | |
| SRR648709 | root MeJA 24h DSN normalized | 25.4537 | |
| SRR837772 | seedling CK | 53.20595 | |
| SRR122243 | sterile seedlings AE CK 1 | 23.4899 | |
| SRR122245 | sterile seedlings AE CK 2 | 17.2967 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 26.5529 | |
| SRR122253 | stem CK | 18.6364 | |
| SRR646572 | shoots CK | 27.794 | |
| SRR647068 | shoots MeJA 6h 1 | 27.72885 | |
| SRR646596 | shoots MeJA 6h 2 | 29.07115 | |
| SRR646604 | shoots MeJA 24h | 36.0925 | |
| SRR924147 | suspension cells EX ORCA2 CK | 16.55815 | |
| SRR924148 | suspension cells EX ORCA3 CK | 18.43145 |