CRO_T002866's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T002866 | cytochrome P450, family 87, subfamily A, polypeptide |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G64940 | 3.00E-150 | CYP89A6|cytochrome P450, family 87, subfamily A, polypeptide 6 |
| Arabidopsis thaliana | AT1G64950 | 6.00E-147 | CYP89A5|cytochrome P450, family 89, subfamily A, polypeptide 5 |
| Arabidopsis thaliana | AT2G12190 | 8.00E-146 | Cytochrome P450 superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001223 | Cytochrome_P450, Cytochrome P450: CYP89A vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis vindoline and vinblastine biosynthesis substrate-specific transmembrane transporter activity | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T002866 | scaffolds.min_1000bp | scaffold_2956381 | 11966 | 13627 | + |
Gene detail image
| Genome: |
| CRO_T002866 |
| CDS: |
| CRO_T002866 |
| Transcript: |
| CRO_T002866 |
| Protein: |
| CRO_T002866 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | molecular_function |
| GO:0044550 | secondary metabolite biosynthetic process | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP89A |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T002866 | EC-1.14.13 | oleate epoxidase | poly-hydroxy fatty acids biosynthesis | PWY-6710 |
| CRO_T002866 | EC-1.14.13 | linolenate epoxidase | poly-hydroxy fatty acids biosynthesis | PWY-6710 |
| CRO_T002866 | EC-1.14.18 | linoleate 12-epoxygenase | poly-hydroxy fatty acids biosynthesis | PWY-6710 |
| CRO_T002866 | EC-1.14.13 | vernolate expoxidase | poly-hydroxy fatty acids biosynthesis | PWY-6710 |
| CRO_T002866 | EC-1.14.18 | linoleate 12-epoxygenase | vernolate biosynthesis I | PWY-6014 |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.19 | p450 | 45 | 540 | 1.6e-79 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 30.06185 | |
| SRR122236 | mixed tissue RA CK | 69.4642 | |
| SRR122237 | mixed tissue RB CK | 68.8062 | |
| SRR122250 | callus YE 0.3mg/ml CK | 15.2087 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 13.0482 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 13.1906 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 16.547 | |
| SRR122242 | callus MeJA 100um 0h | 13.0932 | |
| SRR122246 | callus MeJA 100um 6h | 24.7335 | |
| SRR122240 | callus MeJA 100um 12h | 22.1655 | |
| SRR122241 | callus MeJA 100um 24h | 6.107 | |
| SRR122239 | flower CK 1 | 33.8831 | |
| SRR1271859 | flower CK 2 | 21.87485 | |
| SRR1144633 | healthy flowers CK | 38.9975 | |
| SRR1144634 | flowers PnWB infected | 29.07685 | |
| SRR122257 | hairy root CK | 45.3393 | |
| SRR122258 | hairy root MeJA 250um CK | 24.0643 | |
| SRR122259 | hairy root MeJA 250um 24h | 22.6588 | |
| SRR122256 | hairy root RebH F CK | 80.0868 | |
| SRR122255 | hairy root TDCi CK | 46.4675 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 29.0684 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 24.6107 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 66.261 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 66.9537 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 72.6845 | |
| SRR1820238 | Hairy roots CK GUS 3 | 62.1452 | |
| SRR1820233 | Hairy roots CK GUS 4 | 62.8996 | |
| SRR1820326 | Hairy roots CK GUS 5 | 74.9088 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 43.9652 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 43.9937 | |
| SRR122252 | immature leaf CK | 34.1353 | |
| SRR342023 | leaf CK 1 | 29.5198 | |
| SRR342022 | leaf CK 2 | 21.27655 | |
| SRR342019 | leaf CK 3 | 23.303 | |
| SRR342017 | leaf CK 4 | 35.5385 | |
| SRR1271857 | leaf CK 5 | 25.73145 | |
| SRR122251 | mature leaf CK | 35.3464 | |
| SRR648705 | root CK 1 | 5.255675 | |
| SRR1271858 | root CK 2 | 58.9577 | |
| SRR122254 | root CK 3 | 23.6275 | |
| SRR648707 | root MeJA 24h | 6.23253 | |
| SRR648709 | root MeJA 24h DSN normalized | 7.146585 | |
| SRR837772 | seedling CK | 46.7747 | |
| SRR122243 | sterile seedlings AE CK 1 | 17.0808 | |
| SRR122245 | sterile seedlings AE CK 2 | 10.8992 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 23.1653 | |
| SRR122253 | stem CK | 59.9362 | |
| SRR646572 | shoots CK | 21.30505 | |
| SRR647068 | shoots MeJA 6h 1 | 21.3651 | |
| SRR646596 | shoots MeJA 6h 2 | 22.2044 | |
| SRR646604 | shoots MeJA 24h | 28.78185 | |
| SRR924147 | suspension cells EX ORCA2 CK | 15.61195 | |
| SRR924148 | suspension cells EX ORCA3 CK | 10.59245 |