CRO_T003022's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T003022 | SET domain protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G15180 | 0 | SDG2|SET domain protein 2 |
| Arabidopsis thaliana | AT1G77300 | 2.00E-11 | ASHH2|ASH1 HOMOLOG 2;CCR1|CAROTENOID CHLOROPLAST REGULATORY1;EFS|EARLY FLOWERING IN SHORT DAYS;LAZ2|LAZARUS 2;SDG8|SET DOMAIN GROUP 8 |
| Arabidopsis thaliana | AT1G02580 | 6.00E-06 | EMB173|EMBRYO DEFECTIVE 173;FIS1|FERTILIZATION INDEPENDENT SEED 1;MEA|MEDEA;SDG5|SET DOMAIN-CONTAINING PROTEIN 5 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001984 | RNA transport snoRNA binding translation initiation factor binding nucleocytoplasmic transporter activity floral organ development phyllome development mitotic spindle assembly checkpoint floral whorl development Ubiquitin_Proteasome_system, DUB: JAMM pollen germination eukaryotic translation initiation factor 3 complex, eIF3m Transcription_related, Transcription regulator: SET Pwp2p-containing subcomplex of 90S preribosome protein import into nucleus formation of translation preinitiation complex maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of translational initiation Ribosome biogenesis in eukaryotes eukaryotic 48S preinitiation complex cell part eukaryotic 43S preinitiation complex nuclear pore translation initiation factor activity small-subunit processome embryo development ending in seed dormancy | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T003022 | scaffolds.min_1000bp | scaffold_2982041 | 6420 | 19910 | - |
Gene detail image
| Genome: |
| CRO_T003022 |
| CDS: |
| CRO_T003022 |
| Transcript: |
| CRO_T003022 |
| Protein: |
| CRO_T003022 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0048437 | floral organ development | biological_process |
| GO:0048438 | floral whorl development | biological_process |
| GO:0048827 | phyllome development | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00856.25 | SET | 1891 | 1947 | 4.2e-11 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 14.8092 | |
| SRR122236 | mixed tissue RA CK | 12.4822 | |
| SRR122237 | mixed tissue RB CK | 12.34505 | |
| SRR122250 | callus YE 0.3mg/ml CK | 42.2223 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 40.6508 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 39.6034 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 40.4624 | |
| SRR122242 | callus MeJA 100um 0h | 46.6609 | |
| SRR122246 | callus MeJA 100um 6h | 31.556 | |
| SRR122240 | callus MeJA 100um 12h | 34.9629 | |
| SRR122241 | callus MeJA 100um 24h | 48.8654 | |
| SRR122239 | flower CK 1 | 36.7982 | |
| SRR1271859 | flower CK 2 | 33.2176 | |
| SRR1144633 | healthy flowers CK | 38.05855 | |
| SRR1144634 | flowers PnWB infected | 20.78345 | |
| SRR122257 | hairy root CK | 36.3355 | |
| SRR122258 | hairy root MeJA 250um CK | 23.7938 | |
| SRR122259 | hairy root MeJA 250um 24h | 23.3967 | |
| SRR122256 | hairy root RebH F CK | 25.0414 | |
| SRR122255 | hairy root TDCi CK | 30.1592 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 24.2552 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 22.4374 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 46.7255 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 45.728 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 51.0615 | |
| SRR1820238 | Hairy roots CK GUS 3 | 45.5588 | |
| SRR1820233 | Hairy roots CK GUS 4 | 46.0329 | |
| SRR1820326 | Hairy roots CK GUS 5 | 59.2034 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 16.9635 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 12.3242 | |
| SRR122252 | immature leaf CK | 29.8981 | |
| SRR342023 | leaf CK 1 | 29.731 | |
| SRR342022 | leaf CK 2 | 46.98155 | |
| SRR342019 | leaf CK 3 | 39.93275 | |
| SRR342017 | leaf CK 4 | 37.9415 | |
| SRR1271857 | leaf CK 5 | 33.2716 | |
| SRR122251 | mature leaf CK | 32.6185 | |
| SRR648705 | root CK 1 | 6.105225 | |
| SRR1271858 | root CK 2 | 28.1672 | |
| SRR122254 | root CK 3 | 25.1328 | |
| SRR648707 | root MeJA 24h | 7.43386 | |
| SRR648709 | root MeJA 24h DSN normalized | 7.764005 | |
| SRR837772 | seedling CK | 12.72585 | |
| SRR122243 | sterile seedlings AE CK 1 | 24.5668 | |
| SRR122245 | sterile seedlings AE CK 2 | 22.6991 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 25.6768 | |
| SRR122253 | stem CK | 26.2587 | |
| SRR646572 | shoots CK | 31.241 | |
| SRR647068 | shoots MeJA 6h 1 | 27.31275 | |
| SRR646596 | shoots MeJA 6h 2 | 28.39515 | |
| SRR646604 | shoots MeJA 24h | 29.84185 | |
| SRR924147 | suspension cells EX ORCA2 CK | 5.15069 | |
| SRR924148 | suspension cells EX ORCA3 CK | 5.18567 |