CRO_T004676's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T004676 | Phototropic-responsive NPH3 family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G66560 | 0 | Phototropic-responsive NPH3 family protein |
| Arabidopsis thaliana | AT3G50840 | 3.00E-171 | Phototropic-responsive NPH3 family protein |
| Arabidopsis thaliana | AT1G30440 | 2.00E-142 | Phototropic-responsive NPH3 family protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T015735 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000115 | phosphatidylethanolamine biosynthesis II | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T004676 | scaffolds.min_1000bp | scaffold_3058488 | 62228 | 65268 | + |
Gene detail image
| Genome: |
| CRO_T004676 |
| CDS: |
| CRO_T004676 |
| Transcript: |
| CRO_T004676 |
| Protein: |
| CRO_T004676 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.28 | BTB | 20 | 143 | 2.7e-05 |
| PF03000.11 | NPH3 | 245 | 504 | 1.1e-82 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 18.06525 | |
| SRR122236 | mixed tissue RA CK | 2.414225 | |
| SRR122237 | mixed tissue RB CK | 2.3129 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.19277 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.94466 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 6.20398 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 5.89937 | |
| SRR122242 | callus MeJA 100um 0h | 3.29951 | |
| SRR122246 | callus MeJA 100um 6h | 5.15953 | |
| SRR122240 | callus MeJA 100um 12h | 4.4348 | |
| SRR122241 | callus MeJA 100um 24h | 1.62819 | |
| SRR122239 | flower CK 1 | 18.676 | |
| SRR1271859 | flower CK 2 | 9.210315 | |
| SRR1144633 | healthy flowers CK | 19.56485 | |
| SRR1144634 | flowers PnWB infected | 19.30715 | |
| SRR122257 | hairy root CK | 33.7845 | |
| SRR122258 | hairy root MeJA 250um CK | 30.0803 | |
| SRR122259 | hairy root MeJA 250um 24h | 12.1798 | |
| SRR122256 | hairy root RebH F CK | 43.9565 | |
| SRR122255 | hairy root TDCi CK | 30.4041 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 23.1869 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 16.565 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 18.2929 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 24.4095 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 16.9708 | |
| SRR1820238 | Hairy roots CK GUS 3 | 15.467 | |
| SRR1820233 | Hairy roots CK GUS 4 | 19.2709 | |
| SRR1820326 | Hairy roots CK GUS 5 | 20.59985 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 7.16225 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 18.7841 | |
| SRR122252 | immature leaf CK | 43.9816 | |
| SRR342023 | leaf CK 1 | 44.62905 | |
| SRR342022 | leaf CK 2 | 31.5418 | |
| SRR342019 | leaf CK 3 | 40.28255 | |
| SRR342017 | leaf CK 4 | 47.04195 | |
| SRR1271857 | leaf CK 5 | 11.4269 | |
| SRR122251 | mature leaf CK | 33.0897 | |
| SRR648705 | root CK 1 | 21.04945 | |
| SRR1271858 | root CK 2 | 25.31525 | |
| SRR122254 | root CK 3 | 25.4924 | |
| SRR648707 | root MeJA 24h | 13.7239 | |
| SRR648709 | root MeJA 24h DSN normalized | 14.9738 | |
| SRR837772 | seedling CK | 21.1422 | |
| SRR122243 | sterile seedlings AE CK 1 | 23.1906 | |
| SRR122245 | sterile seedlings AE CK 2 | 12.528 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 24.4143 | |
| SRR122253 | stem CK | 16.2746 | |
| SRR646572 | shoots CK | 26.995 | |
| SRR647068 | shoots MeJA 6h 1 | 23.7602 | |
| SRR646596 | shoots MeJA 6h 2 | 21.9512 | |
| SRR646604 | shoots MeJA 24h | 21.41545 | |
| SRR924147 | suspension cells EX ORCA2 CK | 20.17535 | |
| SRR924148 | suspension cells EX ORCA3 CK | 24.50805 |