CRO_T006197's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006197 | Ribosomal protein L1p/L10e family |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G08360 | 6.00E-103 | Ribosomal protein L1p/L10e family |
| Arabidopsis thaliana | AT2G27530 | 1.00E-101 | PGY1|PIGGYBACK1 |
| Arabidopsis thaliana | AT2G42650 | 6.00E-07 | Ribosomal protein L1p/L10e family |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T015410 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000985 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex ATP binding RNA polymerase III activity cytosolic large ribosomal subunit ESCRT I complex NURF complex Transcription_related, Transcription regulator: SNF2 mitochondrial intermembrane space biotin-carboxyl carrier protein assembly fatty acid biosynthesis initiation I seleno-amino acid biosynthesis CCR4-NOT complex octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Transcription_related, Transcription factor: BES1 cystathionine gamma-lyase activity phosphatidic acid transporter activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity protein complex binding NADPH:quinone reductase activity cystathionine beta-lyase activity biotin carboxylase activity nucleosome binding | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006197 | scaffolds.min_1000bp | scaffold_3067599 | 45401 | 49249 | + |
Gene detail image
| Genome: |
| CRO_T006197 |
| CDS: |
| CRO_T006197 |
| Transcript: |
| CRO_T006197 |
| Protein: |
| CRO_T006197 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| GO:0006412 | translation | biological_process |
| GO:0022625 | cytosolic large ribosomal subunit | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K02865 | RP-L10Ae | - | Ribosome | ko03010 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00687.18 | Ribosomal_L1 | 23 | 210 | 5.9e-44 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 163.475 | |
| SRR122236 | mixed tissue RA CK | 267.319 | |
| SRR122237 | mixed tissue RB CK | 254.7995 | |
| SRR122250 | callus YE 0.3mg/ml CK | 288.686 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 183.391 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 223.877 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 251.903 | |
| SRR122242 | callus MeJA 100um 0h | 246.584 | |
| SRR122246 | callus MeJA 100um 6h | 183.623 | |
| SRR122240 | callus MeJA 100um 12h | 200.005 | |
| SRR122241 | callus MeJA 100um 24h | 208.912 | |
| SRR122239 | flower CK 1 | 138.645 | |
| SRR1271859 | flower CK 2 | 63.6586 | |
| SRR1144633 | healthy flowers CK | 202.6975 | |
| SRR1144634 | flowers PnWB infected | 222.4245 | |
| SRR122257 | hairy root CK | 168.46 | |
| SRR122258 | hairy root MeJA 250um CK | 199.596 | |
| SRR122259 | hairy root MeJA 250um 24h | 220.951 | |
| SRR122256 | hairy root RebH F CK | 143.418 | |
| SRR122255 | hairy root TDCi CK | 153.42 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 199.06 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 211.795 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 162.272 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 154.398 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 124.41 | |
| SRR1820238 | Hairy roots CK GUS 3 | 136.413 | |
| SRR1820233 | Hairy roots CK GUS 4 | 150.948 | |
| SRR1820326 | Hairy roots CK GUS 5 | 154.4665 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 145.051 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 140.773 | |
| SRR122252 | immature leaf CK | 189.898 | |
| SRR342023 | leaf CK 1 | 242.3665 | |
| SRR342022 | leaf CK 2 | 193.4565 | |
| SRR342019 | leaf CK 3 | 162.8375 | |
| SRR342017 | leaf CK 4 | 142.626 | |
| SRR1271857 | leaf CK 5 | 64.25605 | |
| SRR122251 | mature leaf CK | 225.943 | |
| SRR648705 | root CK 1 | 337.5075 | |
| SRR1271858 | root CK 2 | 106.0195 | |
| SRR122254 | root CK 3 | 197.255 | |
| SRR648707 | root MeJA 24h | 339.434 | |
| SRR648709 | root MeJA 24h DSN normalized | 330.6485 | |
| SRR837772 | seedling CK | 111.964 | |
| SRR122243 | sterile seedlings AE CK 1 | 154.791 | |
| SRR122245 | sterile seedlings AE CK 2 | 178.66 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 144.792 | |
| SRR122253 | stem CK | 219.183 | |
| SRR646572 | shoots CK | 250.096 | |
| SRR647068 | shoots MeJA 6h 1 | 217.129 | |
| SRR646596 | shoots MeJA 6h 2 | 220.0445 | |
| SRR646604 | shoots MeJA 24h | 241.069 | |
| SRR924147 | suspension cells EX ORCA2 CK | 463.146 | |
| SRR924148 | suspension cells EX ORCA3 CK | 659.1965 |