Gene detail

CRO_T015410's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T015410	regulatory particle AAA-ATPase 2A

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT2G20140	0	RPT2b\|regulatory particle AAA-ATPase 2b
Arabidopsis thaliana	AT4G29040	0	RPT2a\|regulatory particle AAA-ATPase 2A
Arabidopsis thaliana	AT5G58290	4.00E-107	RPT3\|regulatory particle triple-A ATPase 3

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	CRO_T018295 CRO_T006205 CRO_T013345 CRO_T015892 CRO_T032951 CRO_T006197 CRO_T009284 CRO_T033712 CRO_T008172 Details...
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM001709	positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process vacuolar acidification vacuolar proton-transporting V-type ATPase, V0 domain cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex cytoplasmic, membrane-bounded vesicle ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism Proteasome Spliceosome Oxidative phosphorylation nucleic acid binding nucleotide binding	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T015410	scaffolds.min_1000bp	scaffold_3064470	135216	139137	-

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T015410
AGAAAGTTTTCTTGAAGAGAAAGACAAGAAATTTTCGGATTCGCGATAAATCCCTAGCTTCCTTCCAGTCACAGCACAGAATTTTTGCTAACTATGGGTCAGGGGACGCCTGGTGGTCTAAATCGGCAGCTACCCGGGGACCGGAAGAACGACGGCGACAAGAAAGAGAAAAAATTCGAGCCGGCGGCACCACCAGCTCGCGTCGGCAGAAAGCAGAGGAAGCAGAAAGGTCCGGAAGCAGCTGCTAGGCTTCCGACGGTCACGCCTTTGACAAAATGTAAACTGCGACTGCTGAAGCTTGAACGGATCAAAGATTACCTCTTAATGGAAGAAGAATTCGTGACGAATCAGGAGCGGCTGAAACCCCAAGAAGAAAAGACCGAAGAAGATCGTTCCAAGGTCGACGATCTCCGTGGGTCTCCTATGAGTGTCGGAAACTTAGAAGAGCTTATTGATGAGAATCACGCCATTGTATCCTCGTCAGTTGGGCCGGAGTATTATGTGGGGATCTTGTCATTTGTTGACAAGGACCAACTCGAGCCTGGATGTGCTATTCTGATGCACAATAAGGTATATAATTTAAGTGATTTTGAGATTTTCTTGTTTTGCTCTTTGTTAACTTGTTACTTCTTAGGGTTAGGGTTTTAGATTGGTGAGGTAGGATAGCAGTAAGGGAATTTTTGCAAGTAGGAAAACTAATGAAAGTTTTGCACTAGGTTTAGGTATTAGCTCGATAATCCAGGAATGGTTGATGGTTGAGCTTGTCTCCACATTAAACGTTGAATTGGGAGTTTTTCTTGGGTGGGGTGGTGGTGGTGATATTTGAGATAGTCTTGAGGAGTTACTTTGTCTATGGTTATCTAAACGCTGGAAGCACAGATAAAAAGGAAAACATTGTACGGAATTGGTCTTTGGCCAAAGCACGGGTAAAAAGCAATGGGCTTTGGCCAGTATAGAAGAACAAAACAGAAATTGTGATTATGTACTTGGAGTGTAGCTTAATGTAAGAGTTCAGTGTTTGAGAACAGATGCATTCATGGTGGAATAAGAAATTTGTTTGTATGCTGAAGTTGGTCATTTACTGCTTGTCTAAAGTATGATTTGAGGGGACAAATATTTTGGGATTGGTCTATAGCTGCCGGTTCTCTGTCATGACTTGCCTCCACCAGAGCTGGTTCTGGATTCCGCTACCTTTGTAGGAAGCTTGAAGTACAAAGGAAAACTGTTTGAAACATTTTGAATTGCAGTCTTTCACTTCTGAGGAAGAAGTTGTGTTTCTGCTTTGATACTCTAGCTTGAGCGTAAACAATTAGTGGTTGCTAAGACAGATGAGTTCTTTAATGCTGTAGAATTAGATTTTGGCCTGAATTCATGGAATCTTTTCAGTCAACACCTGGACACCTCTTTAGAAAACGTATTGACATCCTTAACAAGCTTGCTACCATGGATGTGTACTCTAGGAATGCCAAATTTCTTTATTGTTGGTCATGAGAAGTGGATGTGTACTCTAGTATCTGCTGTGTATTGAATATATGTACTTTTCCGTTTATAGGATGACAAGATGGTAAGTGTAGTAACTGCTAATTTTTTTGTACGTTTCATGTACTGTGTACATAATCGTAGATGTTATTTACATTCTGAAGAAATAGTCATTGGAAATTTTTTTTTATCTCAGTTTTATCTCTTCTTATTGATCTTCCCTAAAAGCTAAAAGTTACGTGGAATTGCAATCAAGAATCTCATGTTATGCAAACTTGGTTGCAGGTTCTCTCTGTGGTCGGGCTTCTTCAAGATGAAGTTGACCCCATGGTTTCTGTAATGAAAGTCGAGAAGGCTCCATTGGAATCATATGCTGATATAGGTGGATTAGATGCCCAGATACAGGAGATCAAGGAAGCAGTGGAACTCCCTTTGACACATCCTGAATTGTATGAAGATATTGGTATTAAACCGCCTAAAGGAGTCATACTTTATGGGGAGCCTGGCACTGGCAAAACTCTGCTTGCTAAGGTTTGCTTGCTCATATTTCATTAACTGCAAAATAAAATGTCCATCTTAGGGTTTCATATAGTGAAGTTAAACACTGTTCAGTCTGATTACCTATTTATTGTTATTCGTTTATTTATAAATCTTTCTTTAAGTAGTCGTTACTATTTGTCAACGTCTTCCTGGATATGCTAAGTATGATTTTGTACTCAGTTTCACTGGATCGATGGAGTTTTTTTACGATTCTTAATAGAAGTGAAGAAAGCAAAGAGACAGGGAAATACATCAGAAGAGCCTTGCTAGCTTATTTCATATTGTCATATACAATTGATTGAATGTCTTGGATAAAGAAAAGAAAGAAAATACAGTGTCAATGCTGCAATTTCTTGGGATAGCTTGTGTTCTATAGATTATGCTGGTTAGATAATGTCTTTATTTTCTTTTTTGTTAGTAGTAATACATATGAACATGTGTGGATGAGTGGCTCATATGGCGCAGCTTGAATGATATCCAGTGCATATGTATCTGGCTCTGTGGGTGCTATGTTTAGTTGGATTCTTATACCTGCTGGGGATACAATGTTATCTTATACCAGTATGCCATAGCTGGGATATCTTGATATATTCCTATATGACTACTTTCGTCCAGTCTAATTTCAGTCACTGGTTAGCATGTTAGTTCTTCTCTATCCCCGGATGTTCTATATTTTAATGCATCTTCTCTTTCAGGCTGTAGCAAACTCTACTTCAGCAACTTTCTTACGTGTTGTTGGAAGTGAGTTGATCCAGAAATACCTTGGAGATGGTCCCAAATTGGTCAGGGAGCTCTTTAGGGTCGCTGATGAGCTATCACCATCTATTGTCTTTATTGATGAAATTGATGCTGTTGGGACGAAAAGGTAAAAGCTTCTGTTCATACCGACGTCTGAAATCGTAATATTGCATTAGCTAATAACAACTTTTGCTTCAGGTACGATGCTCATTCGGGTGGTGAGCGTGAGATTCAGAGGACCATGTTGGAACTGCTGAATCAGTTGGATGGTTTTGATTCACGAGGAGATGTTAAAGTTATTCTTGCAACAAATAAAATTGAATCTCTTGATCCTGCACTTCTTCGGCCTGGTAGGATAGACAGAAAAATCGAATTTCCTCTTCCAGATATTAAGACTAGGAGACGTATTTTTCAGGTATTTACACAATGATTATTATTGGCAATGGATTTAAAGATGTGAGAATTTGCTGACGTTTGAAATTCTCATAATGTAGATACACACATCAAGGATGACATTGGCTGATGATGTGAATCTGGAAGAATTTGTAATGACTAAAGACGAGTTTTCTGGAGCTGATATCAAGGCAATATGTACGGAAGCTGGATTGCTTGCTCTGAGAGAGCGGAGAATGAAGGTATGGTAACAATAATAACAAGTATTATACCCTATAAATGCTTTCATTTTTATGGTAATGTTCGAGTATTCTGTGATTTTGAGGGAAGCCTTTTGTATAATTTCTAGTCTTACGAACGAACTATTATTGATTGTTTCATATCATATTATTCAGGTAACCCATGCAGATTTTAAGAAGGCCAAGGACAAAGTAATGTTTAAGAAAAAAGAAGGGGTTCCGGAAGGACTCTATATGTGATGTGATGACACTATGAGATGGATTTTTATTTTTTATCAAGACCATTATGTTCAGTGTATTTGATTTTTAAACGACGTTTTTTATTTTTTGTTTTTTTTTTAATTAACAAACTAATCTTGTTAAGAATTATTTTGGTCTAATACTCTACTTTTATGGGCATTGTAGCATAATTGTGTGTTAGCATATTTAGTTGGCATTTTTCATCACTTCGATATGTCGGTATAATCTGTGTTTAGTTTTTAGTCAGTTGGTTCTGTAGTTACTATCGCAGGTAAGAAATATAAATATAAGAG
CDS:
CRO_T015410
ATGGGTCAGGGGACGCCTGGTGGTCTAAATCGGCAGCTACCCGGGGACCGGAAGAACGACGGCGACAAGAAAGAGAAAAAATTCGAGCCGGCGGCACCACCAGCTCGCGTCGGCAGAAAGCAGAGGAAGCAGAAAGGTCCGGAAGCAGCTGCTAGGCTTCCGACGGTCACGCCTTTGACAAAATGTAAACTGCGACTGCTGAAGCTTGAACGGATCAAAGATTACCTCTTAATGGAAGAAGAATTCGTGACGAATCAGGAGCGGCTGAAACCCCAAGAAGAAAAGACCGAAGAAGATCGTTCCAAGGTCGACGATCTCCGTGGGTCTCCTATGAGTGTCGGAAACTTAGAAGAGCTTATTGATGAGAATCACGCCATTGTATCCTCGTCAGTTGGGCCGGAGTATTATGTGGGGATCTTGTCATTTGTTGACAAGGACCAACTCGAGCCTGGATGTGCTATTCTGATGCACAATAAGGTTCTCTCTGTGGTCGGGCTTCTTCAAGATGAAGTTGACCCCATGGTTTCTGTAATGAAAGTCGAGAAGGCTCCATTGGAATCATATGCTGATATAGGTGGATTAGATGCCCAGATACAGGAGATCAAGGAAGCAGTGGAACTCCCTTTGACACATCCTGAATTGTATGAAGATATTGGTATTAAACCGCCTAAAGGAGTCATACTTTATGGGGAGCCTGGCACTGGCAAAACTCTGCTTGCTAAGGCTGTAGCAAACTCTACTTCAGCAACTTTCTTACGTGTTGTTGGAAGTGAGTTGATCCAGAAATACCTTGGAGATGGTCCCAAATTGGTCAGGGAGCTCTTTAGGGTCGCTGATGAGCTATCACCATCTATTGTCTTTATTGATGAAATTGATGCTGTTGGGACGAAAAGGTACGATGCTCATTCGGGTGGTGAGCGTGAGATTCAGAGGACCATGTTGGAACTGCTGAATCAGTTGGATGGTTTTGATTCACGAGGAGATGTTAAAGTTATTCTTGCAACAAATAAAATTGAATCTCTTGATCCTGCACTTCTTCGGCCTGGTAGGATAGACAGAAAAATCGAATTTCCTCTTCCAGATATTAAGACTAGGAGACGTATTTTTCAGATACACACATCAAGGATGACATTGGCTGATGATGTGAATCTGGAAGAATTTGTAATGACTAAAGACGAGTTTTCTGGAGCTGATATCAAGGCAATATGTACGGAAGCTGGATTGCTTGCTCTGAGAGAGCGGAGAATGAAGGTAACCCATGCAGATTTTAAGAAGGCCAAGGACAAAGTAATGTTTAAGAAAAAAGAAGGGGTTCCGGAAGGACTCTATATGTGA
Transcript:
CRO_T015410
AGAAAGTTTTCTTGAAGAGAAAGACAAGAAATTTTCGGATTCGCGATAAATCCCTAGCTTCCTTCCAGTCACAGCACAGAATTTTTGCTAACTATGGGTCAGGGGACGCCTGGTGGTCTAAATCGGCAGCTACCCGGGGACCGGAAGAACGACGGCGACAAGAAAGAGAAAAAATTCGAGCCGGCGGCACCACCAGCTCGCGTCGGCAGAAAGCAGAGGAAGCAGAAAGGTCCGGAAGCAGCTGCTAGGCTTCCGACGGTCACGCCTTTGACAAAATGTAAACTGCGACTGCTGAAGCTTGAACGGATCAAAGATTACCTCTTAATGGAAGAAGAATTCGTGACGAATCAGGAGCGGCTGAAACCCCAAGAAGAAAAGACCGAAGAAGATCGTTCCAAGGTCGACGATCTCCGTGGGTCTCCTATGAGTGTCGGAAACTTAGAAGAGCTTATTGATGAGAATCACGCCATTGTATCCTCGTCAGTTGGGCCGGAGTATTATGTGGGGATCTTGTCATTTGTTGACAAGGACCAACTCGAGCCTGGATGTGCTATTCTGATGCACAATAAGGTTCTCTCTGTGGTCGGGCTTCTTCAAGATGAAGTTGACCCCATGGTTTCTGTAATGAAAGTCGAGAAGGCTCCATTGGAATCATATGCTGATATAGGTGGATTAGATGCCCAGATACAGGAGATCAAGGAAGCAGTGGAACTCCCTTTGACACATCCTGAATTGTATGAAGATATTGGTATTAAACCGCCTAAAGGAGTCATACTTTATGGGGAGCCTGGCACTGGCAAAACTCTGCTTGCTAAGGCTGTAGCAAACTCTACTTCAGCAACTTTCTTACGTGTTGTTGGAAGTGAGTTGATCCAGAAATACCTTGGAGATGGTCCCAAATTGGTCAGGGAGCTCTTTAGGGTCGCTGATGAGCTATCACCATCTATTGTCTTTATTGATGAAATTGATGCTGTTGGGACGAAAAGGTACGATGCTCATTCGGGTGGTGAGCGTGAGATTCAGAGGACCATGTTGGAACTGCTGAATCAGTTGGATGGTTTTGATTCACGAGGAGATGTTAAAGTTATTCTTGCAACAAATAAAATTGAATCTCTTGATCCTGCACTTCTTCGGCCTGGTAGGATAGACAGAAAAATCGAATTTCCTCTTCCAGATATTAAGACTAGGAGACGTATTTTTCAGATACACACATCAAGGATGACATTGGCTGATGATGTGAATCTGGAAGAATTTGTAATGACTAAAGACGAGTTTTCTGGAGCTGATATCAAGGCAATATGTACGGAAGCTGGATTGCTTGCTCTGAGAGAGCGGAGAATGAAGGTAACCCATGCAGATTTTAAGAAGGCCAAGGACAAAGTAATGTTTAAGAAAAAAGAAGGGGTTCCGGAAGGACTCTATATGTGATGTGATGACACTATGAGATGGATTTTTATTTTTTATCAAGACCATTATGTTCAGTGTATTTGATTTTTAAACGACGTTTTTTATTTTTTGTTTTTTTTTTAATTAACAAACTAATCTTGTTAAGAATTATTTTGGTCTAATACTCTACTTTTATGGGCATTGTAGCATAATTGTGTGTTAGCATATTTAGTTGGCATTTTTCATCACTTCGATATGTCGGTATAATCTGTGTTTAGTTTTTAGTCAGTTGGTTCTGTAGTTACTATCGCAGGTAAGAAATATAAATATAAGAG
Protein:
CRO_T015410
MGQGTPGGLNRQLPGDRKNDGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKTEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM*

Genome:

CRO_T015410

AGAAAGTTTTCTTGAAGAGAAAGACAAGAAATTTTCGGATTCGCGATAAATCCCTAGCTTCCTTCCAGTCACAGCACAGAATTTTTGCTAACTATGGGTCAGGGGACGCCTGGTGGTCTAAATCGGCAGCTACCCGGGGACCGGAAGAACGACGGCGACAAGAAAGAGAAAAAATTCGAGCCGGCGGCACCACCAGCTCGCGTCGGCAGAAAGCAGAGGAAGCAGAAAGGTCCGGAAGCAGCTGCTAGGCTTCCGACGGTCACGCCTTTGACAAAATGTAAACTGCGACTGCTGAAGCTTGAACGGATCAAAGATTACCTCTTAATGGAAGAAGAATTCGTGACGAATCAGGAGCGGCTGAAACCCCAAGAAGAAAAGACCGAAGAAGATCGTTCCAAGGTCGACGATCTCCGTGGGTCTCCTATGAGTGTCGGAAACTTAGAAGAGCTTATTGATGAGAATCACGCCATTGTATCCTCGTCAGTTGGGCCGGAGTATTATGTGGGGATCTTGTCATTTGTTGACAAGGACCAACTCGAGCCTGGATGTGCTATTCTGATGCACAATAAGGTATATAATTTAAGTGATTTTGAGATTTTCTTGTTTTGCTCTTTGTTAACTTGTTACTTCTTAGGGTTAGGGTTTTAGATTGGTGAGGTAGGATAGCAGTAAGGGAATTTTTGCAAGTAGGAAAACTAATGAAAGTTTTGCACTAGGTTTAGGTATTAGCTCGATAATCCAGGAATGGTTGATGGTTGAGCTTGTCTCCACATTAAACGTTGAATTGGGAGTTTTTCTTGGGTGGGGTGGTGGTGGTGATATTTGAGATAGTCTTGAGGAGTTACTTTGTCTATGGTTATCTAAACGCTGGAAGCACAGATAAAAAGGAAAACATTGTACGGAATTGGTCTTTGGCCAAAGCACGGGTAAAAAGCAATGGGCTTTGGCCAGTATAGAAGAACAAAACAGAAATTGTGATTATGTACTTGGAGTGTAGCTTAATGTAAGAGTTCAGTGTTTGAGAACAGATGCATTCATGGTGGAATAAGAAATTTGTTTGTATGCTGAAGTTGGTCATTTACTGCTTGTCTAAAGTATGATTTGAGGGGACAAATATTTTGGGATTGGTCTATAGCTGCCGGTTCTCTGTCATGACTTGCCTCCACCAGAGCTGGTTCTGGATTCCGCTACCTTTGTAGGAAGCTTGAAGTACAAAGGAAAACTGTTTGAAACATTTTGAATTGCAGTCTTTCACTTCTGAGGAAGAAGTTGTGTTTCTGCTTTGATACTCTAGCTTGAGCGTAAACAATTAGTGGTTGCTAAGACAGATGAGTTCTTTAATGCTGTAGAATTAGATTTTGGCCTGAATTCATGGAATCTTTTCAGTCAACACCTGGACACCTCTTTAGAAAACGTATTGACATCCTTAACAAGCTTGCTACCATGGATGTGTACTCTAGGAATGCCAAATTTCTTTATTGTTGGTCATGAGAAGTGGATGTGTACTCTAGTATCTGCTGTGTATTGAATATATGTACTTTTCCGTTTATAGGATGACAAGATGGTAAGTGTAGTAACTGCTAATTTTTTTGTACGTTTCATGTACTGTGTACATAATCGTAGATGTTATTTACATTCTGAAGAAATAGTCATTGGAAATTTTTTTTTATCTCAGTTTTATCTCTTCTTATTGATCTTCCCTAAAAGCTAAAAGTTACGTGGAATTGCAATCAAGAATCTCATGTTATGCAAACTTGGTTGCAGGTTCTCTCTGTGGTCGGGCTTCTTCAAGATGAAGTTGACCCCATGGTTTCTGTAATGAAAGTCGAGAAGGCTCCATTGGAATCATATGCTGATATAGGTGGATTAGATGCCCAGATACAGGAGATCAAGGAAGCAGTGGAACTCCCTTTGACACATCCTGAATTGTATGAAGATATTGGTATTAAACCGCCTAAAGGAGTCATACTTTATGGGGAGCCTGGCACTGGCAAAACTCTGCTTGCTAAGGTTTGCTTGCTCATATTTCATTAACTGCAAAATAAAATGTCCATCTTAGGGTTTCATATAGTGAAGTTAAACACTGTTCAGTCTGATTACCTATTTATTGTTATTCGTTTATTTATAAATCTTTCTTTAAGTAGTCGTTACTATTTGTCAACGTCTTCCTGGATATGCTAAGTATGATTTTGTACTCAGTTTCACTGGATCGATGGAGTTTTTTTACGATTCTTAATAGAAGTGAAGAAAGCAAAGAGACAGGGAAATACATCAGAAGAGCCTTGCTAGCTTATTTCATATTGTCATATACAATTGATTGAATGTCTTGGATAAAGAAAAGAAAGAAAATACAGTGTCAATGCTGCAATTTCTTGGGATAGCTTGTGTTCTATAGATTATGCTGGTTAGATAATGTCTTTATTTTCTTTTTTGTTAGTAGTAATACATATGAACATGTGTGGATGAGTGGCTCATATGGCGCAGCTTGAATGATATCCAGTGCATATGTATCTGGCTCTGTGGGTGCTATGTTTAGTTGGATTCTTATACCTGCTGGGGATACAATGTTATCTTATACCAGTATGCCATAGCTGGGATATCTTGATATATTCCTATATGACTACTTTCGTCCAGTCTAATTTCAGTCACTGGTTAGCATGTTAGTTCTTCTCTATCCCCGGATGTTCTATATTTTAATGCATCTTCTCTTTCAGGCTGTAGCAAACTCTACTTCAGCAACTTTCTTACGTGTTGTTGGAAGTGAGTTGATCCAGAAATACCTTGGAGATGGTCCCAAATTGGTCAGGGAGCTCTTTAGGGTCGCTGATGAGCTATCACCATCTATTGTCTTTATTGATGAAATTGATGCTGTTGGGACGAAAAGGTAAAAGCTTCTGTTCATACCGACGTCTGAAATCGTAATATTGCATTAGCTAATAACAACTTTTGCTTCAGGTACGATGCTCATTCGGGTGGTGAGCGTGAGATTCAGAGGACCATGTTGGAACTGCTGAATCAGTTGGATGGTTTTGATTCACGAGGAGATGTTAAAGTTATTCTTGCAACAAATAAAATTGAATCTCTTGATCCTGCACTTCTTCGGCCTGGTAGGATAGACAGAAAAATCGAATTTCCTCTTCCAGATATTAAGACTAGGAGACGTATTTTTCAGGTATTTACACAATGATTATTATTGGCAATGGATTTAAAGATGTGAGAATTTGCTGACGTTTGAAATTCTCATAATGTAGATACACACATCAAGGATGACATTGGCTGATGATGTGAATCTGGAAGAATTTGTAATGACTAAAGACGAGTTTTCTGGAGCTGATATCAAGGCAATATGTACGGAAGCTGGATTGCTTGCTCTGAGAGAGCGGAGAATGAAGGTATGGTAACAATAATAACAAGTATTATACCCTATAAATGCTTTCATTTTTATGGTAATGTTCGAGTATTCTGTGATTTTGAGGGAAGCCTTTTGTATAATTTCTAGTCTTACGAACGAACTATTATTGATTGTTTCATATCATATTATTCAGGTAACCCATGCAGATTTTAAGAAGGCCAAGGACAAAGTAATGTTTAAGAAAAAAGAAGGGGTTCCGGAAGGACTCTATATGTGATGTGATGACACTATGAGATGGATTTTTATTTTTTATCAAGACCATTATGTTCAGTGTATTTGATTTTTAAACGACGTTTTTTATTTTTTGTTTTTTTTTTAATTAACAAACTAATCTTGTTAAGAATTATTTTGGTCTAATACTCTACTTTTATGGGCATTGTAGCATAATTGTGTGTTAGCATATTTAGTTGGCATTTTTCATCACTTCGATATGTCGGTATAATCTGTGTTTAGTTTTTAGTCAGTTGGTTCTGTAGTTACTATCGCAGGTAAGAAATATAAATATAAGAG

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	molecular_function
GO:0008540	proteasome regulatory particle, base subcomplex	cellular_component
GO:0017025	TBP-class protein binding	molecular_function
GO:0030433	ER-associated ubiquitin-dependent protein catabolic process	biological_process
GO:0031595	nuclear proteasome complex	cellular_component
GO:0031597	cytosolic proteasome complex	cellular_component
GO:0036402	proteasome-activating ATPase activity	molecular_function
GO:0045899	positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	biological_process
GO:1901800	positive regulation of proteasomal protein catabolic process	biological_process

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
K03062	PSMC1	-	Proteasome	ko03050

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.26	AAA	226	359	2.8e-40

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	146.7105
SRR122236	mixed tissue RA CK	46.0698
SRR122237	mixed tissue RB CK	47.8663
SRR122250	callus YE 0.3mg/ml CK	49.4282
SRR122247	callus YE 0.3mg/ml 6h	71.2475
SRR122248	callus YE 0.3mg/ml 12h	64.9515
SRR122249	callus YE 0.3mg/ml 24h	55.3373
SRR122242	callus MeJA 100um 0h	60.9614
SRR122246	callus MeJA 100um 6h	75.4987
SRR122240	callus MeJA 100um 12h	77.0141
SRR122241	callus MeJA 100um 24h	65.4671
SRR122239	flower CK 1	154.597
SRR1271859	flower CK 2	110.862
SRR1144633	healthy flowers CK	128.588
SRR1144634	flowers PnWB infected	158.526
SRR122257	hairy root CK	156.813
SRR122258	hairy root MeJA 250um CK	160.439
SRR122259	hairy root MeJA 250um 24h	212.088
SRR122256	hairy root RebH F CK	150.3
SRR122255	hairy root TDCi CK	148.79
SRR122260	hairy root TDCi MeJA 250um CK	156.106
SRR122261	hairy root TDCi MeJA 250um 24h	204.512
SRR1820161	Hairy roots CK BAI1 14	193.339
SRR1820157	Hairy roots CK BAI1 18	187.828
SRR1820149	Hairy roots CK BAI1 19	198.522
SRR1820238	Hairy roots CK GUS 3	234.118
SRR1820233	Hairy roots CK GUS 4	205.088
SRR1820326	Hairy roots CK GUS 5	191.338
SRR2098821	hairy roots OE AS CK rep1	222.162
SRR2099440	hairy roots OE AS CK rep2	151.999
SRR122252	immature leaf CK	113.074
SRR342023	leaf CK 1	177.3285
SRR342022	leaf CK 2	147.83
SRR342019	leaf CK 3	157.298
SRR342017	leaf CK 4	151.6085
SRR1271857	leaf CK 5	95.48755
SRR122251	mature leaf CK	123.628
SRR648705	root CK 1	318.7005
SRR1271858	root CK 2	111.0645
SRR122254	root CK 3	133.891
SRR648707	root MeJA 24h	297.7585
SRR648709	root MeJA 24h DSN normalized	271.94
SRR837772	seedling CK	159.3955
SRR122243	sterile seedlings AE CK 1	139.123
SRR122245	sterile seedlings AE CK 2	196.451
SRR122244	sterile seedlings AF MeJA 6um 12d	146.673
SRR122253	stem CK	133.37
SRR646572	shoots CK	105.2995
SRR647068	shoots MeJA 6h 1	124.168
SRR646596	shoots MeJA 6h 2	110.073
SRR646604	shoots MeJA 24h	116.1905
SRR924147	suspension cells EX ORCA2 CK	269.6625
SRR924148	suspension cells EX ORCA3 CK	255.4045

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