CRO_T006881's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006881 | hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000916 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: zf-HD 2-phytyl-1,4-naphthoquinone methyltransferase activity cation transport regulation of sequestering of zinc ion response to zinc ion phylloquinone biosynthetic process ceramide degradation phylloquinol biosynthesis Glycosaminoglycan degradation Sphingolipid metabolism Ubiquinone and other terpenoid-quinone biosynthesis zinc ion transmembrane transporter activity gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt S-adenosylmethionine-dependent methyltransferase activity | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006881 | scaffolds.min_1000bp | scaffold_2980584 | 4800 | 5459 | - |
Gene detail image
| Genome: |
| CRO_T006881 |
| CDS: |
| CRO_T006881 |
| Transcript: |
| CRO_T006881 |
| Protein: |
| CRO_T006881 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.12 | PMEI | 2 | 99 | 5.7e-07 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 17.53325 | |
| SRR122236 | mixed tissue RA CK | 42.35685 | |
| SRR122237 | mixed tissue RB CK | 47.1836 | |
| SRR122250 | callus YE 0.3mg/ml CK | 36.9933 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 25.5891 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 30.4399 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 30.6656 | |
| SRR122242 | callus MeJA 100um 0h | 47.9015 | |
| SRR122246 | callus MeJA 100um 6h | 15.6396 | |
| SRR122240 | callus MeJA 100um 12h | 22.4456 | |
| SRR122241 | callus MeJA 100um 24h | 41.2265 | |
| SRR122239 | flower CK 1 | 10.5042 | |
| SRR1271859 | flower CK 2 | 6.03084 | |
| SRR1144633 | healthy flowers CK | 6.846525 | |
| SRR1144634 | flowers PnWB infected | 25.8947 | |
| SRR122257 | hairy root CK | 16.5885 | |
| SRR122258 | hairy root MeJA 250um CK | 10.2949 | |
| SRR122259 | hairy root MeJA 250um 24h | 7.56227 | |
| SRR122256 | hairy root RebH F CK | 12.2595 | |
| SRR122255 | hairy root TDCi CK | 19.8978 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 12.0313 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 5.98327 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 7.75072 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 4.34288 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 8.87795 | |
| SRR1820238 | Hairy roots CK GUS 3 | 9.83491 | |
| SRR1820233 | Hairy roots CK GUS 4 | 7.6616 | |
| SRR1820326 | Hairy roots CK GUS 5 | 20.09125 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 10.6674 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 13.9583 | |
| SRR122252 | immature leaf CK | 26.4393 | |
| SRR342023 | leaf CK 1 | 18.9796 | |
| SRR342022 | leaf CK 2 | 17.12455 | |
| SRR342019 | leaf CK 3 | 10.9785 | |
| SRR342017 | leaf CK 4 | 13.00095 | |
| SRR1271857 | leaf CK 5 | 25.1858 | |
| SRR122251 | mature leaf CK | 16.7397 | |
| SRR648705 | root CK 1 | 5.734735 | |
| SRR1271858 | root CK 2 | 9.93135 | |
| SRR122254 | root CK 3 | 16.9987 | |
| SRR648707 | root MeJA 24h | 5.613285 | |
| SRR648709 | root MeJA 24h DSN normalized | 6.77585 | |
| SRR837772 | seedling CK | 6.39106 | |
| SRR122243 | sterile seedlings AE CK 1 | 21.2918 | |
| SRR122245 | sterile seedlings AE CK 2 | 11.6189 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 15.2365 | |
| SRR122253 | stem CK | 15.4981 | |
| SRR646572 | shoots CK | 18.96555 | |
| SRR647068 | shoots MeJA 6h 1 | 18.5321 | |
| SRR646596 | shoots MeJA 6h 2 | 23.3756 | |
| SRR646604 | shoots MeJA 24h | 11.488 | |
| SRR924147 | suspension cells EX ORCA2 CK | 18.88715 | |
| SRR924148 | suspension cells EX ORCA3 CK | 8.20322 |