TreatCFM000916's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.002836251 | cazy family |
| Transcription_related, Transcription factor: zf-HD | 0.003189132 | TF family |
| 2-phytyl-1,4-naphthoquinone methyltransferase activity | 0.003940052 | GO:0052624 |
| cation transport | 0.007813374 | GO:0006812 |
| regulation of sequestering of zinc ion | 0.007813374 | GO:0061088 |
| response to zinc ion | 0.007813374 | GO:0010043 |
| phylloquinone biosynthetic process | 0.007813374 | GO:0042372 |
| ceramide degradation | 0.010421065 | plantCyc |
| phylloquinol biosynthesis | 0.010421065 | plantCyc |
| Glycosaminoglycan degradation | 0.012330363 | KEGG pathway |
| Sphingolipid metabolism | 0.012330363 | KEGG pathway |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.015117519 | KEGG pathway |
| zinc ion transmembrane transporter activity | 0.022606145 | GO:0005385 |
| gluconeogenesis I | 0.030535486 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.030535486 | plantCyc |
| glycolysis IV (plant cytosol) | 0.030535486 | plantCyc |
| Rubisco shunt | 0.030535486 | plantCyc |
| S-adenosylmethionine-dependent methyltransferase activity | 0.041110432 | GO:0008757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005306 | AT1G07380 (0) | Neutral/alkaline non-lysosomal ceramidase |
| CRO_T006881 | - | - |
| CRO_T008784 | AT5G13690 (7.00E-64) | CYL1|CYCLOPS 1; NAGLU|N-ACETYL-GLUCOSAMINIDASE |
| CRO_T016808 | AT5G38380 (6.00E-39) | |
| CRO_T017952 | AT3G25480 (6.00E-58) | Rhodanese/Cell cycle control phosphatase superfamily protein |
| CRO_T023190 | AT5G57300 (3.00E-21) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T026545 | AT4G24660 (6.00E-56) | ATHB22|HOMEOBOX PROTEIN 22; MEE68|MATERNAL EFFECT EMBRYO ARREST 68; ZHD2|ZINC FINGER HOMEODOMAIN 2 |
| CRO_T031746 | AT4G02725 (1.00E-14) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000594 | Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription factor: zf-HD mevalonate kinase activity response to zinc ion cation transport regulation of sequestering of zinc ion Antigen processing and presentation Sphingolipid metabolism isoprenoid biosynthetic process ceramide degradation Terpenoid backbone biosynthesis mevalonate pathway I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt zinc ion transmembrane transporter activity | details |
| TreatCFM000595 | S-methyl-5'-thioadenosine degradation I S-methyl-5'-thioadenosine degradation II Transcription_related, Transcription factor: NF-YB Transcription_related, Transcription factor: zf-HD pyrimidine nucleobase metabolic process nucleoside metabolic process pyrimidine nucleoside salvage photorespiration chloroplast part Antigen processing and presentation Cysteine and methionine metabolism uridine kinase activity | details |
| TreatCFM000596 | Tight junction mevalonate kinase activity ATP binding Sphingolipid metabolism cation transport regulation of sequestering of zinc ion response to zinc ion zinc ion transmembrane transporter activity non-membrane spanning protein tyrosine kinase activity isoprenoid biosynthetic process ceramide degradation Terpenoid backbone biosynthesis mevalonate pathway I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt peptidyl-tyrosine phosphorylation | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001837 | mevalonate pathway I mevalonate kinase activity regulation of sequestering of zinc ion cation transport response to zinc ion Terpenoid backbone biosynthesis isoprenoid biosynthetic process zinc ion transmembrane transporter activity | details |
| TreatCFM001959 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polyprenyltransferase activity integral component of mitochondrial inner membrane Glycosaminoglycan degradation ubiquinone biosynthetic process isoprenoid biosynthetic process Ubiquinone and other terpenoid-quinone biosynthesis peptidase activity transporter activity | details |
| TreatCFM001975 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation geraniol kinase activity organic cyclic compound metabolic process long-chain fatty acid biosynthetic process CTP:2-trans,-6-trans-farnesol kinase activity response to molecule of fungal origin geranylgeraniol kinase activity small molecule metabolic process tocopherol cyclase activity farnesol metabolic process adenyl-nucleotide exchange factor activity sphingosine N-acyltransferase activity heterocycle metabolic process carpel development cellular lipid metabolic process Sphingolipid metabolism ceramide degradation farnesylcysteine salvage pathway vitamin E biosynthesis (tocopherols) chaperone binding Ubiquinone and other terpenoid-quinone biosynthesis Terpenoid backbone biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt isomerase activity nucleotidyltransferase activity regulation of catalytic activity | details |
Expression profiles
 Show details about module gene expression profiling |