CRO_T012056's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T012056 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G64110 | 0 | DAA1|DUO1-activated ATPase 1 |
| Arabidopsis thaliana | AT4G28000 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Arabidopsis thaliana | AT5G52882 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000232 | Lipoic acid metabolism lipoate biosynthesis and incorporation I xyloglucan biosynthesis protein lipoylation lipoate biosynthetic process cytoplasmic microtubule organization Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX octanoyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C3H response to stress microtubule-severing ATPase activity | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T012056 | scaffolds.min_1000bp | scaffold_2980670 | 7126 | 12710 | - |
Gene detail image
| Genome: |
| CRO_T012056 |
| CDS: |
| CRO_T012056 |
| Transcript: |
| CRO_T012056 |
| Protein: |
| CRO_T012056 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0005634 | nucleus | cellular_component |
| GO:0008568 | microtubule-severing ATPase activity | molecular_function |
| GO:0031122 | cytoplasmic microtubule organization | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.26 | AAA | 560 | 690 | 2.3e-38 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 8.744355 | |
| SRR122236 | mixed tissue RA CK | 10.8589 | |
| SRR122237 | mixed tissue RB CK | 10.271195 | |
| SRR122250 | callus YE 0.3mg/ml CK | 8.4589 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.83464 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 4.9819 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 3.5101 | |
| SRR122242 | callus MeJA 100um 0h | 10.8462 | |
| SRR122246 | callus MeJA 100um 6h | 27.9611 | |
| SRR122240 | callus MeJA 100um 12h | 23.2752 | |
| SRR122241 | callus MeJA 100um 24h | 5.858 | |
| SRR122239 | flower CK 1 | 52.341 | |
| SRR1271859 | flower CK 2 | 65.0494 | |
| SRR1144633 | healthy flowers CK | 38.62055 | |
| SRR1144634 | flowers PnWB infected | 4.685385 | |
| SRR122257 | hairy root CK | 9.52226 | |
| SRR122258 | hairy root MeJA 250um CK | 9.0122 | |
| SRR122259 | hairy root MeJA 250um 24h | 3.43206 | |
| SRR122256 | hairy root RebH F CK | 35.852 | |
| SRR122255 | hairy root TDCi CK | 4.92904 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 2.36401 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 2.11185 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 38.3499 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 47.0922 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 38.0922 | |
| SRR1820238 | Hairy roots CK GUS 3 | 38.0716 | |
| SRR1820233 | Hairy roots CK GUS 4 | 41.9689 | |
| SRR1820326 | Hairy roots CK GUS 5 | 39.4051 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 30.2756 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 7.44309 | |
| SRR122252 | immature leaf CK | 5.10732 | |
| SRR342023 | leaf CK 1 | 2.72339 | |
| SRR342022 | leaf CK 2 | 1.9615 | |
| SRR342019 | leaf CK 3 | 0.426385 | |
| SRR342017 | leaf CK 4 | 1.48059 | |
| SRR1271857 | leaf CK 5 | 39.7876 | |
| SRR122251 | mature leaf CK | 2.06504 | |
| SRR648705 | root CK 1 | 2.99637 | |
| SRR1271858 | root CK 2 | 55.16465 | |
| SRR122254 | root CK 3 | 9.25616 | |
| SRR648707 | root MeJA 24h | 2.947525 | |
| SRR648709 | root MeJA 24h DSN normalized | 3.49373 | |
| SRR837772 | seedling CK | 1.92537 | |
| SRR122243 | sterile seedlings AE CK 1 | 5.36003 | |
| SRR122245 | sterile seedlings AE CK 2 | 31.5233 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 6.30459 | |
| SRR122253 | stem CK | 17.9688 | |
| SRR646572 | shoots CK | 8.29207 | |
| SRR647068 | shoots MeJA 6h 1 | 8.92013 | |
| SRR646596 | shoots MeJA 6h 2 | 10.6642 | |
| SRR646604 | shoots MeJA 24h | 1.996985 | |
| SRR924147 | suspension cells EX ORCA2 CK | 9.201695 | |
| SRR924148 | suspension cells EX ORCA3 CK | 22.54345 |