TreatCFM000232's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Lipoic acid metabolism | 0.001034034 | KEGG pathway |
| lipoate biosynthesis and incorporation I | 0.002481903 | plantCyc |
| xyloglucan biosynthesis | 0.005267968 | plantCyc |
| protein lipoylation | 0.007082508 | GO:0009249 |
| lipoate biosynthetic process | 0.007082508 | GO:0009107 |
| cytoplasmic microtubule organization | 0.010223942 | GO:0031122 |
| Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX | 0.013640786 | kinase family |
| octanoyltransferase activity | 0.015015511 | GO:0016415 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.019257755 | cazy family |
| Transcription_related, Transcription factor: C3H | 0.019257755 | TF family |
| response to stress | 0.033490167 | GO:0006950 |
| microtubule-severing ATPase activity | 0.04122681 | GO:0008568 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000170 | AT5G07950 (2.00E-61) | unknown protein |
| CRO_T012056 | AT1G64110 (0) | DAA1|DUO1-activated ATPase 1 |
| CRO_T020307 | - | - |
| CRO_T020965 | - | - |
| CRO_T025370 | AT2G24370 (0) | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain |
| CRO_T028192 | AT1G47578 (2.00E-92) | Biotin/lipoate A/B protein ligase family |
| CRO_T030558 | AT2G29040 (7.00E-134) | Exostosin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000511 | Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX photosynthetic acclimation Plant-pathogen interaction regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport response to stress peptidase activity | details |
| TreatCFM000561 | lipoate biosynthesis and incorporation I Lipoic acid metabolism lipoate biosynthetic process protein lipoylation cytoplasmic microtubule organization response to endoplasmic reticulum stress endoplasmic reticulum lumen Transcription_related, Transcription regulator: SWI/SNF-BAF60b octanoyltransferase activity protein disulfide isomerase activity microtubule-severing ATPase activity Transcription_related, Transcription factor: C3H | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM001365 | Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX response to stress ATP binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis xylan biosynthesis DNA replication Inositol phosphate metabolism 1-phosphatidylinositol-4-phosphate 5-kinase activity DNA ligase (ATP) activity DNA ligation involved in DNA repair DNA recombination pollen germination phosphatidylinositol phosphorylation DNA biosynthetic process cellulose synthase (UDP-forming) activity | details |
Expression profiles
 Show details about module gene expression profiling |