CRO_T012781's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T012781 | ammonium transporter |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G38290 | 2.00E-101 | AMT2|ammonium transporter 2;AMT2;1|AMMONIUM TRANSPORTER 2;1 |
| Arabidopsis thaliana | AT3G24290 | 1.00E-16 | AMT1;5|ammonium transporter 1;5 |
| Arabidopsis thaliana | AT1G64780 | 5.00E-14 | AMT1;2|ammonium transporter 1;2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000042 | Biosynthesis of amino acids L-histidine biosynthesis L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) Transcription_related, Transcription factor: LOB prephenate dehydratase activity arogenate dehydratase activity histidinol dehydrogenase activity chorismate mutase activity organic cation transport histidine biosynthetic process nitrogen utilization ammonium transmembrane transport L-phenylalanine biosynthetic process nucleoside metabolic process chloroplast stroma chloroplast outer membrane ammonium transmembrane transporter activity pollen development chloroplast organization cell wall organization or biogenesis | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T012781 | scaffolds.min_1000bp | scaffold_3038001 | 19893 | 22582 | - |
Gene detail image
| Genome: |
| CRO_T012781 |
| CDS: |
| CRO_T012781 |
| Transcript: |
| CRO_T012781 |
| Protein: |
| CRO_T012781 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0008519 | ammonium transmembrane transporter activity | molecular_function |
| GO:0015695 | organic cation transport | biological_process |
| GO:0019740 | nitrogen utilization | biological_process |
| GO:0072488 | ammonium transmembrane transport | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00909.18 | Ammonium_transp | 33 | 447 | 1e-83 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0.151988 | |
| SRR122236 | mixed tissue RA CK | 0.293554 | |
| SRR122237 | mixed tissue RB CK | 0.5520465 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0.0886548 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.0947329 | |
| SRR122242 | callus MeJA 100um 0h | 0 | |
| SRR122246 | callus MeJA 100um 6h | 0.0504149 | |
| SRR122240 | callus MeJA 100um 12h | 0.0753007 | |
| SRR122241 | callus MeJA 100um 24h | 0.737797 | |
| SRR122239 | flower CK 1 | 3.82187 | |
| SRR1271859 | flower CK 2 | 0.3539165 | |
| SRR1144633 | healthy flowers CK | 0.185592 | |
| SRR1144634 | flowers PnWB infected | 0 | |
| SRR122257 | hairy root CK | 0.0458916 | |
| SRR122258 | hairy root MeJA 250um CK | 0 | |
| SRR122259 | hairy root MeJA 250um 24h | 0 | |
| SRR122256 | hairy root RebH F CK | 0 | |
| SRR122255 | hairy root TDCi CK | 0.0515823 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 0.0373456 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 0 | |
| SRR1820238 | Hairy roots CK GUS 3 | 0 | |
| SRR1820233 | Hairy roots CK GUS 4 | 0 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0 | |
| SRR122252 | immature leaf CK | 0 | |
| SRR342023 | leaf CK 1 | 0 | |
| SRR342022 | leaf CK 2 | 0 | |
| SRR342019 | leaf CK 3 | 0 | |
| SRR342017 | leaf CK 4 | 0 | |
| SRR1271857 | leaf CK 5 | 0 | |
| SRR122251 | mature leaf CK | 0 | |
| SRR648705 | root CK 1 | 0 | |
| SRR1271858 | root CK 2 | 16.2196 | |
| SRR122254 | root CK 3 | 0 | |
| SRR648707 | root MeJA 24h | 0 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.0374916 | |
| SRR837772 | seedling CK | 0 | |
| SRR122243 | sterile seedlings AE CK 1 | 0 | |
| SRR122245 | sterile seedlings AE CK 2 | 0.180974 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 0.0371597 | |
| SRR122253 | stem CK | 0 | |
| SRR646572 | shoots CK | 0 | |
| SRR647068 | shoots MeJA 6h 1 | 0.055286 | |
| SRR646596 | shoots MeJA 6h 2 | 0.1017463 | |
| SRR646604 | shoots MeJA 24h | 0 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.0442408 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |