TreatCFM000042's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Biosynthesis of amino acids | 0.000505318 | KEGG pathway |
| L-histidine biosynthesis | 0.008434822 | plantCyc |
| L-phenylalanine biosynthesis II | 0.008434822 | plantCyc |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.008434822 | plantCyc |
| Transcription_related, Transcription factor: LOB | 0.011641107 | TF family |
| prephenate dehydratase activity | 0.016495224 | GO:0004664 |
| arogenate dehydratase activity | 0.016495224 | GO:0047769 |
| histidinol dehydrogenase activity | 0.016495224 | GO:0004399 |
| chorismate mutase activity | 0.016495224 | GO:0004106 |
| organic cation transport | 0.019010273 | GO:0015695 |
| histidine biosynthetic process | 0.019010273 | GO:0000105 |
| nitrogen utilization | 0.019010273 | GO:0019740 |
| ammonium transmembrane transport | 0.019010273 | GO:0072488 |
| L-phenylalanine biosynthetic process | 0.019010273 | GO:0009094 |
| nucleoside metabolic process | 0.019010273 | GO:0009116 |
| chloroplast stroma | 0.026262968 | GO:0009570 |
| chloroplast outer membrane | 0.026262968 | GO:0009707 |
| ammonium transmembrane transporter activity | 0.026370923 | GO:0008519 |
| pollen development | 0.047008059 | GO:0009555 |
| chloroplast organization | 0.047008059 | GO:0009658 |
| cell wall organization or biogenesis | 0.047008059 | GO:0071554 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003835 | - | - |
| CRO_T005176 | AT2G30900 (1.00E-92) | TBL43|TRICHOME BIREFRINGENCE-LIKE 43 |
| CRO_T009074 | AT2G37440 (2.00E-121) | DNAse I-like superfamily protein |
| CRO_T011944 | AT5G63890 (0) | ATHDH|histidinol dehydrogenase; HISN8|HISTIDINE BIOSYNTHESIS 8 |
| CRO_T012781 | AT2G38290 (2.00E-101) | AMT2|ammonium transporter 2; AMT2; 1|AMMONIUM TRANSPORTER 2; 1 |
| CRO_T014225 | AT4G28940 (4.00E-67) | Phosphorylase superfamily protein |
| CRO_T017192 | AT4G04980 (1.00E-11) | unknown protein |
| CRO_T018326 | AT1G08250 (7.00E-111) | ADT6|arogenate dehydratase 6 |
| CRO_T019029 | AT1G07900 (5.00E-47) | LBD1|LOB domain-containing protein 1 |
| CRO_T020827 | - | - |
| CRO_T022773 | AT1G11070 (3.00E-76) | |
| CRO_T032840 | AT1G18410 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000052 | details | |
| TreatCFM000110 | Transcription_related, Transcription factor: LOB chloroplast organization chloroplast outer membrane membrane part | details |
| TreatCFM000327 | nucleoside metabolic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity dTDP biosynthetic process flavonoid biosynthetic process dTTP biosynthetic process dUDP biosynthetic process flavonoid glucuronidation thymidylate kinase activity catalytic activity uridylate kinase activity apigeninidin 5-O-glucoside biosynthesis luteolinidin 5-O-glucoside biosynthesis Pyrimidine metabolism intracellular membrane-bounded organelle integral component of membrane pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) formation of glycosidic bonds, GlycosylTransferases: GTnc pyrimidine deoxyribonucleotides de novo biosynthesis I cytokinin-O-glucosides biosynthesis chloroplast outer membrane chloroplast organization | details |
| TreatCFM000747 | L-histidine biosynthesis adenylosuccinate synthase activity histidinol dehydrogenase activity 'de novo' AMP biosynthetic process endoplasmic reticulum tubular network organization adenosine ribonucleotides de novo biosynthesis endoplasmic reticulum tubular network histidine biosynthetic process Group II intron splicing protein metabolic process | details |
| TreatCFM000858 | extracellular region cytokinin-O-glucosides biosynthesis L-histidine biosynthesis histidinol dehydrogenase activity growth factor activity Biosynthesis of amino acids Ubiquitin mediated proteolysis chitinase activity chitin binding histidine biosynthetic process cell proliferation chitin catabolic process ubiquitin protein ligase binding formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
Expression profiles
 Show details about module gene expression profiling |