CRO_T014807's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T014807 | AP2/B3-like transcriptional factor family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G10860 | 5.00E-22 | Cytochrome b-c1 complex, subunit 8 protein |
| Arabidopsis thaliana | AT3G10860 | 5.00E-22 | Cytochrome b-c1 complex, subunit 8 protein |
| Arabidopsis thaliana | AT5G05370 | 9.00E-21 | Cytochrome b-c1 complex, subunit 8 protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001050 | Transcription_related, Transcription factor: B3 aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) ascorbate glutathione cycle NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I cytoplasmic microtubule organization triacylglycerol degradation | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T014807 | scaffolds.min_1000bp | scaffold_3003465 | 12466 | 20281 | - |
Gene detail image
| Genome: |
| CRO_T014807 |
| CDS: |
| CRO_T014807 |
| Transcript: |
| CRO_T014807 |
| Protein: |
| CRO_T014807 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0005634 | nucleus | cellular_component |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10890.5 | DUF2741 | 47 | 104 | 7.1e-25 |
| PF02362.18 | B3 | 308 | 397 | 1.7e-16 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 76.4809 | |
| SRR122236 | mixed tissue RA CK | 16.14575 | |
| SRR122237 | mixed tissue RB CK | 15.33985 | |
| SRR122250 | callus YE 0.3mg/ml CK | 68.108 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 146.009 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 75.6603 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 103.753 | |
| SRR122242 | callus MeJA 100um 0h | 111.951 | |
| SRR122246 | callus MeJA 100um 6h | 68.8926 | |
| SRR122240 | callus MeJA 100um 12h | 88.6956 | |
| SRR122241 | callus MeJA 100um 24h | 167.906 | |
| SRR122239 | flower CK 1 | 49.6653 | |
| SRR1271859 | flower CK 2 | 50.16315 | |
| SRR1144633 | healthy flowers CK | 244.698 | |
| SRR1144634 | flowers PnWB infected | 101.442 | |
| SRR122257 | hairy root CK | 73.6942 | |
| SRR122258 | hairy root MeJA 250um CK | 40.6285 | |
| SRR122259 | hairy root MeJA 250um 24h | 52.7796 | |
| SRR122256 | hairy root RebH F CK | 76.9475 | |
| SRR122255 | hairy root TDCi CK | 52.4889 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 40.5314 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 50.5917 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 43.3301 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 37.1103 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 32.0722 | |
| SRR1820238 | Hairy roots CK GUS 3 | 29.7309 | |
| SRR1820233 | Hairy roots CK GUS 4 | 30.2602 | |
| SRR1820326 | Hairy roots CK GUS 5 | 20.7965 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 62.1456 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 45.4507 | |
| SRR122252 | immature leaf CK | 38.2762 | |
| SRR342023 | leaf CK 1 | 40.0719 | |
| SRR342022 | leaf CK 2 | 27.58865 | |
| SRR342019 | leaf CK 3 | 27.99585 | |
| SRR342017 | leaf CK 4 | 29.40485 | |
| SRR1271857 | leaf CK 5 | 18.5674 | |
| SRR122251 | mature leaf CK | 34.1143 | |
| SRR648705 | root CK 1 | 149.709 | |
| SRR1271858 | root CK 2 | 26.4697 | |
| SRR122254 | root CK 3 | 28.2418 | |
| SRR648707 | root MeJA 24h | 162.936 | |
| SRR648709 | root MeJA 24h DSN normalized | 150.417 | |
| SRR837772 | seedling CK | 35.88485 | |
| SRR122243 | sterile seedlings AE CK 1 | 67.4504 | |
| SRR122245 | sterile seedlings AE CK 2 | 66.3885 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 67.004 | |
| SRR122253 | stem CK | 28.4843 | |
| SRR646572 | shoots CK | 22.468 | |
| SRR647068 | shoots MeJA 6h 1 | 32.7708 | |
| SRR646596 | shoots MeJA 6h 2 | 22.8369 | |
| SRR646604 | shoots MeJA 24h | 45.00645 | |
| SRR924147 | suspension cells EX ORCA2 CK | 134.0835 | |
| SRR924148 | suspension cells EX ORCA3 CK | 215.392 |