TissueCFM001050's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
Transcription_related, Transcription factor: B3 | 0.009010541 | TF family |
aerobic respiration I (cytochrome c) | 0.022199198 | plantCyc |
aerobic respiration III (alternative oxidase pathway) | 0.022199198 | plantCyc |
ascorbate glutathione cycle | 0.022199198 | plantCyc |
NAD/NADH phosphorylation and dephosphorylation | 0.022199198 | plantCyc |
mitochondrial respiratory chain complex I | 0.025092233 | GO:0005747 |
cytoplasmic microtubule organization | 0.026295574 | GO:0031122 |
triacylglycerol degradation | 0.029401337 | plantCyc |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T003097 | AT4G27680 (3.00E-72) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
CRO_T008260 | AT2G38270 (1.00E-18) | ATGRX2|GLUTAREDOXIN 2; AtGRXS16|glutaredoxin 16; CXIP2|CAX-interacting protein 2 |
CRO_T014807 | AT3G10860 (5.00E-22) | Cytochrome b-c1 complex, subunit 8 protein |
CRO_T022150 | AT2G31490 (4.00E-22) | unknown protein |
CRO_T022826 | AT4G22753 (1.00E-24) | SMO1-3|sterol 4-alpha methyl oxidase 1-3 |
CRO_T030456 | AT5G19630 (7.00E-77) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TissueCFM000260 | positive regulation of mitochondrial translation nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair, DNA incision, 5'-to lesion modulation by symbiont of host calcium or calmodulin-mediated signal transduction copper ion transmembrane transport mitochondrial respiratory chain complex IV assembly resolution of meiotic recombination intermediates Hippo signaling pathway Mineral absorption Nucleotide excision repair nucleotide-excision repair factor 1 complex protein sumoylation double-strand break repair via homologous recombination protein tag copper ion transmembrane transporter activity single-stranded DNA endodeoxyribonuclease activity prefoldin complex integral component of mitochondrial inner membrane Ras signaling pathway | details |
TissueCFM000642 | Transcription_related, Transcription regulator: SWI/SNF-BAF60b karyogamy Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi transport complex transcription coactivator activity retrograde vesicle-mediated transport, Golgi to ER Golgi organization aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation | details |
TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
TissueCFM000716 | glutathione dehydrogenase (ascorbate) activity glucose-6-phosphate isomerase activity Rap1 signaling pathway Calcium signaling pathway ascorbate glutathione cycle GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) cytoskeleton Ascorbate and aldarate metabolism gluconeogenesis I glycolysis I (from glucose 6-phosphate) actin binding glutathione transferase activity gluconeogenesis | details |
TissueCFM000735 | cytosolic large ribosomal subunit Ribosome structural constituent of ribosome cytoplasmic translation positive regulation of protein kinase activity translation protein kinase activator activity preribosome, large subunit precursor ribosomal large subunit assembly translational elongation response to heat large ribosomal subunit rRNA binding heat shock protein binding protein folding | details |
TissueCFM000851 | L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion seed maturation calcium-mediated signaling regulation of photomorphogenesis cytoplasmic microtubule organization Transcription_related, Transcription factor: C2H2 oxidation-reduction process seed germination Ascorbate and aldarate metabolism MAPK signaling pathway - yeast Ras signaling pathway L-iditol 2-dehydrogenase activity | details |
TissueCFM000872 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleocytoplasmic transport cellular response to nitrogen levels response to sucrose fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis II Apelin signaling pathway Glutathione metabolism toxin catabolic process glutathione metabolic process small GTPase mediated signal transduction RNA transport | details |
TissueCFM000900 | RNA binding Spliceosome triacylglycerol degradation oxidized purine nucleobase lesion DNA N-glycosylase activity nuclear exosome (RNase complex) U4/U6 x U5 tri-snRNP complex box C/D snoRNP complex maturation of SSU-rRNA maturation of LSU-rRNA tRNA processing translation precatalytic spliceosome rRNA processing RNA secondary structure unwinding mRNA splicing, via spliceosome Ribosome biogenesis in eukaryotes RNA degradation DNA repair | details |
TissueCFM000916 | cytoplasmic microtubule organization nuclear envelope mitochondrial outer membrane nuclear matrix protein transport microtubule-severing ATPase activity protein binding | details |
TissueCFM001007 | cofactor binding Rab GDP-dissociation inhibitor activity arginine transmembrane transporter activity succinate-CoA ligase (ADP-forming) activity succinate-CoA ligase (GDP-forming) activity L-ornithine transmembrane transporter activity L-histidine transmembrane transporter activity L-lysine transmembrane transporter activity L-ornithine transmembrane transport nucleoside triphosphate biosynthetic process succinyl-CoA metabolic process snRNA transcription succinate metabolic process arginine transmembrane transport L-histidine transmembrane transport L-arginine import pyruvate dehydrogenase (acetyl-transferring) activity ornithine-citrulline shuttle pyruvate decarboxylation to acetyl CoA L-lysine transmembrane transport TCA cycle II (plants and fungi) proline biosynthetic process Carbon metabolism acetyl-CoA biosynthetic process from pyruvate response to endoplasmic reticulum stress protein disulfide isomerase activity signal peptide processing endoplasmic reticulum Protein export tricarboxylic acid cycle | details |
TissueCFM001009 | proteasome core complex assembly proteasome binding glucose-6-phosphate isomerase activity Transcription_related, Transcription factor: HB GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis protein tyrosine phosphatase activity heat shock protein binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) peptidyl-tyrosine dephosphorylation response to heat glycolytic process | details |
TissueCFM001121 | snRNA transcription Rab GDP-dissociation inhibitor activity maturation of LSU-rRNA regulation of catalytic activity translational elongation nucleotidyltransferase activity translation elongation factor activity protein transport small GTPase mediated signal transduction | details |
TissueCFM001145 | adenosine ribonucleotides de novo biosynthesis Transcription_related, Transcription regulator: SWI/SNF-BAF60b Golgi transport complex proton-transporting ATP synthase complex, catalytic core F(1) Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi retrograde vesicle-mediated transport, Golgi to ER Golgi organization triglyceride lipase activity Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein peptidyl-prolyl isomerization ATP synthesis coupled proton transport peptidyl-prolyl cis-trans isomerase activity proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism cytosolic large ribosomal subunit ubiquitin-dependent protein catabolic process | details |
TissueCFM001259 | glucose-6-phosphate isomerase activity protein tyrosine phosphatase activity peptidyl-tyrosine dephosphorylation gluconeogenesis glycolytic process GDP-mannose biosynthesis starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose degradation III (sucrose invertase) gluconeogenesis I glycolysis I (from glucose 6-phosphate) ligase activity Aminoacyl-tRNA biosynthesis | details |
Expression profiles
Show details about module gene expression profiling |