TissueCFM001050's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Transcription_related, Transcription factor: B30.009010541TF family
aerobic respiration I (cytochrome c)0.022199198plantCyc
aerobic respiration III (alternative oxidase pathway)0.022199198plantCyc
ascorbate glutathione cycle0.022199198plantCyc
NAD/NADH phosphorylation and dephosphorylation0.022199198plantCyc
mitochondrial respiratory chain complex I0.025092233GO:0005747
cytoplasmic microtubule organization0.026295574GO:0031122
triacylglycerol degradation0.029401337plantCyc

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T003097AT4G27680 (3.00E-72)P-loop containing nucleoside triphosphate hydrolases superfamily protein
CRO_T008260AT2G38270 (1.00E-18)ATGRX2|GLUTAREDOXIN 2; AtGRXS16|glutaredoxin 16; CXIP2|CAX-interacting protein 2
CRO_T014807AT3G10860 (5.00E-22)Cytochrome b-c1 complex, subunit 8 protein
CRO_T022150AT2G31490 (4.00E-22)unknown protein
CRO_T022826AT4G22753 (1.00E-24)SMO1-3|sterol 4-alpha methyl oxidase 1-3
CRO_T030456AT5G19630 (7.00E-77)alpha/beta-Hydrolases superfamily protein

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TissueCFM000260positive regulation of mitochondrial translation
nucleotide-excision repair involved in interstrand cross-link repair
nucleotide-excision repair, DNA incision, 5'-to lesion
modulation by symbiont of host calcium or calmodulin-mediated signal transduction
copper ion transmembrane transport
mitochondrial respiratory chain complex IV assembly
resolution of meiotic recombination intermediates
Hippo signaling pathway
Mineral absorption
Nucleotide excision repair
nucleotide-excision repair factor 1 complex
protein sumoylation
double-strand break repair via homologous recombination
protein tag
copper ion transmembrane transporter activity
single-stranded DNA endodeoxyribonuclease activity
prefoldin complex
integral component of mitochondrial inner membrane
Ras signaling pathway
details
TissueCFM000642Transcription_related, Transcription regulator: SWI/SNF-BAF60b
karyogamy
Golgi vesicle prefusion complex stabilization
retrograde transport, vesicle recycling within Golgi
Golgi transport complex
transcription coactivator activity
retrograde vesicle-mediated transport, Golgi to ER
Golgi organization
aerobic respiration I (cytochrome c)
aerobic respiration III (alternative oxidase pathway)
NAD/NADH phosphorylation and dephosphorylation
details
TissueCFM000647Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase
L-ascorbate degradation IV
L-ascorbate degradation V
ascorbate glutathione cycle
box C/D snoRNP assembly
thiamine salvage
L-iditol 2-dehydrogenase activity
hydroxyethylthiazole kinase activity
MAPK signaling pathway - yeast
Pyruvate metabolism
Thiamine metabolism
details
TissueCFM000716glutathione dehydrogenase (ascorbate) activity
glucose-6-phosphate isomerase activity
Rap1 signaling pathway
Calcium signaling pathway
ascorbate glutathione cycle
GDP-mannose biosynthesis
starch biosynthesis
sucrose biosynthesis I (from photosynthesis)
sucrose biosynthesis II
sucrose degradation III (sucrose invertase)
cytoskeleton
Ascorbate and aldarate metabolism
gluconeogenesis I
glycolysis I (from glucose 6-phosphate)
actin binding
glutathione transferase activity
gluconeogenesis
details
TissueCFM000735cytosolic large ribosomal subunit
Ribosome
structural constituent of ribosome
cytoplasmic translation
positive regulation of protein kinase activity
translation
protein kinase activator activity
preribosome, large subunit precursor
ribosomal large subunit assembly
translational elongation
response to heat
large ribosomal subunit rRNA binding
heat shock protein binding
protein folding
details
TissueCFM000851L-ascorbate degradation IV
L-ascorbate degradation V
ascorbate glutathione cycle
modulation by symbiont of host calcium or calmodulin-mediated signal transduction
regulation of calcium or calmodulin-mediated signal transduction in response to host
detection of calcium ion
seed maturation
calcium-mediated signaling
regulation of photomorphogenesis
cytoplasmic microtubule organization
Transcription_related, Transcription factor: C2H2
oxidation-reduction process
seed germination
Ascorbate and aldarate metabolism
MAPK signaling pathway - yeast
Ras signaling pathway
L-iditol 2-dehydrogenase activity
details
TissueCFM000872adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57
nucleocytoplasmic transport
cellular response to nitrogen levels
response to sucrose
fatty acid β-oxidation II (peroxisome)
unsaturated, even numbered fatty acid β-oxidation
very long chain fatty acid biosynthesis II
Apelin signaling pathway
Glutathione metabolism
toxin catabolic process
glutathione metabolic process
small GTPase mediated signal transduction
RNA transport
details
TissueCFM000900RNA binding
Spliceosome
triacylglycerol degradation
oxidized purine nucleobase lesion DNA N-glycosylase activity
nuclear exosome (RNase complex)
U4/U6 x U5 tri-snRNP complex
box C/D snoRNP complex
maturation of SSU-rRNA
maturation of LSU-rRNA
tRNA processing
translation
precatalytic spliceosome
rRNA processing
RNA secondary structure unwinding
mRNA splicing, via spliceosome
Ribosome biogenesis in eukaryotes
RNA degradation
DNA repair
details
TissueCFM000916cytoplasmic microtubule organization
nuclear envelope
mitochondrial outer membrane
nuclear matrix
protein transport
microtubule-severing ATPase activity
protein binding
details
TissueCFM001007cofactor binding
Rab GDP-dissociation inhibitor activity
arginine transmembrane transporter activity
succinate-CoA ligase (ADP-forming) activity
succinate-CoA ligase (GDP-forming) activity
L-ornithine transmembrane transporter activity
L-histidine transmembrane transporter activity
L-lysine transmembrane transporter activity
L-ornithine transmembrane transport
nucleoside triphosphate biosynthetic process
succinyl-CoA metabolic process
snRNA transcription
succinate metabolic process
arginine transmembrane transport
L-histidine transmembrane transport
L-arginine import
pyruvate dehydrogenase (acetyl-transferring) activity
ornithine-citrulline shuttle
pyruvate decarboxylation to acetyl CoA
L-lysine transmembrane transport
TCA cycle II (plants and fungi)
proline biosynthetic process
Carbon metabolism
acetyl-CoA biosynthetic process from pyruvate
response to endoplasmic reticulum stress
protein disulfide isomerase activity
signal peptide processing
endoplasmic reticulum
Protein export
tricarboxylic acid cycle
details
TissueCFM001009proteasome core complex assembly
proteasome binding
glucose-6-phosphate isomerase activity
Transcription_related, Transcription factor: HB
GDP-mannose biosynthesis
starch biosynthesis
sucrose biosynthesis I (from photosynthesis)
sucrose biosynthesis II
sucrose degradation III (sucrose invertase)
gluconeogenesis
protein tyrosine phosphatase activity
heat shock protein binding
gluconeogenesis I
glycolysis I (from glucose 6-phosphate)
peptidyl-tyrosine dephosphorylation
response to heat
glycolytic process
details
TissueCFM001121snRNA transcription
Rab GDP-dissociation inhibitor activity
maturation of LSU-rRNA
regulation of catalytic activity
translational elongation
nucleotidyltransferase activity
translation elongation factor activity
protein transport
small GTPase mediated signal transduction
details
TissueCFM001145adenosine ribonucleotides de novo biosynthesis
Transcription_related, Transcription regulator: SWI/SNF-BAF60b
Golgi transport complex
proton-transporting ATP synthase complex, catalytic core F(1)
Golgi vesicle prefusion complex stabilization
retrograde transport, vesicle recycling within Golgi
retrograde vesicle-mediated transport, Golgi to ER
Golgi organization
triglyceride lipase activity
Ubiquitin_Proteasome_system, E3 adaptor: BTB
Ubiquitin_Proteasome_system, E3 adaptor: SKP1
protein peptidyl-prolyl isomerization
ATP synthesis coupled proton transport
peptidyl-prolyl cis-trans isomerase activity
proton-transporting ATP synthase activity, rotational mechanism
proton-transporting ATPase activity, rotational mechanism
cytosolic large ribosomal subunit
ubiquitin-dependent protein catabolic process
details
TissueCFM001259glucose-6-phosphate isomerase activity
protein tyrosine phosphatase activity
peptidyl-tyrosine dephosphorylation
gluconeogenesis
glycolytic process
GDP-mannose biosynthesis
starch biosynthesis
sucrose biosynthesis I (from photosynthesis)
sucrose biosynthesis II
sucrose degradation III (sucrose invertase)
gluconeogenesis I
glycolysis I (from glucose 6-phosphate)
ligase activity
Aminoacyl-tRNA biosynthesis
details

Expression profiles


Show details about module gene expression profiling
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