CRO_T018228's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T018228 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G39710 | 1.00E-23 | EMB2745|EMBRYO DEFECTIVE 2745 |
| Arabidopsis thaliana | AT4G28010 | 1.00E-22 | RPF5|RNA processing factor 5 |
| Arabidopsis thaliana | AT3G18020 | 3.00E-20 | Pentatricopeptide repeat (PPR) superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T018228 CRO_T018228 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000708 | Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I chloroplast RNA modification carbohydrate transmembrane transport leaf vascular tissue pattern formation phloem or xylem histogenesis cotyledon vascular tissue pattern formation mRNA processing Transcription_related, Transcription factor: C2H2 phosphatidylcholine acyl editing phospholipases triacylglycerol degradation | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T018228 | scaffolds.min_1000bp | scaffold_3069047 | 55743 | 58781 | - |
Gene detail image
| Genome: |
| CRO_T018228 |
| CDS: |
| CRO_T018228 |
| Transcript: |
| CRO_T018228 |
| Protein: |
| CRO_T018228 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | molecular_function |
| GO:0006397 | mRNA processing | biological_process |
| GO:0009570 | chloroplast stroma | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.3 | PPR_2 | 188 | 236 | 48.8 |
| PF12854.4 | PPR_1 | 338 | 367 | 24.0 |
| PF13041.3 | PPR_2 | 377 | 426 | 51.8 |
| PF13041.3 | PPR_2 | 448 | 496 | 45.9 |
| PF13041.3 | PPR_2 | 520 | 566 | 46.4 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 57.902 | |
| SRR122236 | mixed tissue RA CK | 28.58685 | |
| SRR122237 | mixed tissue RB CK | 29.56855 | |
| SRR122250 | callus YE 0.3mg/ml CK | 56.2934 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 21.8162 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 43.5518 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 52.5887 | |
| SRR122242 | callus MeJA 100um 0h | 44.4747 | |
| SRR122246 | callus MeJA 100um 6h | 25.7516 | |
| SRR122240 | callus MeJA 100um 12h | 21.82 | |
| SRR122241 | callus MeJA 100um 24h | 27.8668 | |
| SRR122239 | flower CK 1 | 45.1502 | |
| SRR1271859 | flower CK 2 | 32.4725 | |
| SRR1144633 | healthy flowers CK | 49.31695 | |
| SRR1144634 | flowers PnWB infected | 56.30795 | |
| SRR122257 | hairy root CK | 5.83816 | |
| SRR122258 | hairy root MeJA 250um CK | 5.52829 | |
| SRR122259 | hairy root MeJA 250um 24h | 6.35422 | |
| SRR122256 | hairy root RebH F CK | 8.72521 | |
| SRR122255 | hairy root TDCi CK | 6.49583 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 7.75191 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 5.57468 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 22.5452 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 23.1427 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 19.058 | |
| SRR1820238 | Hairy roots CK GUS 3 | 20.0496 | |
| SRR1820233 | Hairy roots CK GUS 4 | 21.677 | |
| SRR1820326 | Hairy roots CK GUS 5 | 20.3384 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 7.52313 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 4.86093 | |
| SRR122252 | immature leaf CK | 55.58 | |
| SRR342023 | leaf CK 1 | 79.35735 | |
| SRR342022 | leaf CK 2 | 71.41135 | |
| SRR342019 | leaf CK 3 | 71.3811 | |
| SRR342017 | leaf CK 4 | 88.6071 | |
| SRR1271857 | leaf CK 5 | 170.505 | |
| SRR122251 | mature leaf CK | 71.9504 | |
| SRR648705 | root CK 1 | 29.5179 | |
| SRR1271858 | root CK 2 | 6.523515 | |
| SRR122254 | root CK 3 | 24.0795 | |
| SRR648707 | root MeJA 24h | 20.6637 | |
| SRR648709 | root MeJA 24h DSN normalized | 23.8368 | |
| SRR837772 | seedling CK | 34.3434 | |
| SRR122243 | sterile seedlings AE CK 1 | 48.3193 | |
| SRR122245 | sterile seedlings AE CK 2 | 28.4647 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 34.8103 | |
| SRR122253 | stem CK | 7.5917 | |
| SRR646572 | shoots CK | 52.54725 | |
| SRR647068 | shoots MeJA 6h 1 | 44.1259 | |
| SRR646596 | shoots MeJA 6h 2 | 52.33085 | |
| SRR646604 | shoots MeJA 24h | 14.04185 | |
| SRR924147 | suspension cells EX ORCA2 CK | 16.0568 | |
| SRR924148 | suspension cells EX ORCA3 CK | 17.70375 |