CRO_T019056's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T019056 | E1 C-terminal related |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001229 | Ubiquitin_Proteasome_system, E1: ThiF Pentose phosphate pathway S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I Renin-angiotensin system protein neddylation D-ribose metabolic process ribokinase activity dipeptidyl-peptidase activity acid-amino acid ligase activity NEDD8 activating enzyme activity ribosomal large subunit binding base-excision repair carbohydrate phosphorylation Base excision repair ribosome binding ATP binding serine-type carboxypeptidase activity | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T019056 | scaffolds.min_1000bp | scaffold_3050382 | 9711 | 14223 | - |
Gene detail image
| Genome: |
| CRO_T019056 |
| CDS: |
| CRO_T019056 |
| Transcript: |
| CRO_T019056 |
| Protein: |
| CRO_T019056 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0005634 | nucleus | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| GO:0019781 | NEDD8 activating enzyme activity | molecular_function |
| GO:0045116 | protein neddylation | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K10686 | UBE1C | EC:6.2.1.45 | Ubiquitin mediated proteolysis | ko04120 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00899.18 | ThiF | 33 | 330 | 5.5e-70 |
| PF08825.7 | E2_bind | 345 | 414 | 3.5e-21 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 26.4729 | |
| SRR122236 | mixed tissue RA CK | 43.3999 | |
| SRR122237 | mixed tissue RB CK | 41.7647 | |
| SRR122250 | callus YE 0.3mg/ml CK | 115.759 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 120.465 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 133.338 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 144.382 | |
| SRR122242 | callus MeJA 100um 0h | 134.44 | |
| SRR122246 | callus MeJA 100um 6h | 72.6802 | |
| SRR122240 | callus MeJA 100um 12h | 81.9468 | |
| SRR122241 | callus MeJA 100um 24h | 139.213 | |
| SRR122239 | flower CK 1 | 43.5395 | |
| SRR1271859 | flower CK 2 | 21.7103 | |
| SRR1144633 | healthy flowers CK | 50.4698 | |
| SRR1144634 | flowers PnWB infected | 44.79325 | |
| SRR122257 | hairy root CK | 43.7341 | |
| SRR122258 | hairy root MeJA 250um CK | 57.5314 | |
| SRR122259 | hairy root MeJA 250um 24h | 73.0865 | |
| SRR122256 | hairy root RebH F CK | 50.2441 | |
| SRR122255 | hairy root TDCi CK | 47.3541 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 56.274 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 68.0692 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 51.2818 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 48.9399 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 44.0335 | |
| SRR1820238 | Hairy roots CK GUS 3 | 44.338 | |
| SRR1820233 | Hairy roots CK GUS 4 | 47.0202 | |
| SRR1820326 | Hairy roots CK GUS 5 | 43.6607 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 52.7424 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 31.6341 | |
| SRR122252 | immature leaf CK | 43.2738 | |
| SRR342023 | leaf CK 1 | 44.0347 | |
| SRR342022 | leaf CK 2 | 46.65535 | |
| SRR342019 | leaf CK 3 | 53.66565 | |
| SRR342017 | leaf CK 4 | 50.23565 | |
| SRR1271857 | leaf CK 5 | 21.16895 | |
| SRR122251 | mature leaf CK | 42.3568 | |
| SRR648705 | root CK 1 | 64.68335 | |
| SRR1271858 | root CK 2 | 16.3882 | |
| SRR122254 | root CK 3 | 50.5214 | |
| SRR648707 | root MeJA 24h | 61.7558 | |
| SRR648709 | root MeJA 24h DSN normalized | 62.6598 | |
| SRR837772 | seedling CK | 22.7638 | |
| SRR122243 | sterile seedlings AE CK 1 | 59.2835 | |
| SRR122245 | sterile seedlings AE CK 2 | 53.8029 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 58.2869 | |
| SRR122253 | stem CK | 52.0095 | |
| SRR646572 | shoots CK | 39.19255 | |
| SRR647068 | shoots MeJA 6h 1 | 31.5835 | |
| SRR646596 | shoots MeJA 6h 2 | 31.66115 | |
| SRR646604 | shoots MeJA 24h | 31.63995 | |
| SRR924147 | suspension cells EX ORCA2 CK | 81.03835 | |
| SRR924148 | suspension cells EX ORCA3 CK | 65.87175 |