TissueCFM001229's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E1: ThiF | 0.005307296 | ubs family |
| Pentose phosphate pathway | 0.006746741 | KEGG pathway |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.008111603 | plantCyc |
| L-leucine biosynthesis | 0.008111603 | plantCyc |
| L-leucine degradation I | 0.008111603 | plantCyc |
| Renin-angiotensin system | 0.01348272 | KEGG pathway |
| protein neddylation | 0.019527664 | GO:0045116 |
| D-ribose metabolic process | 0.019527664 | GO:0006014 |
| ribokinase activity | 0.019787251 | GO:0004747 |
| dipeptidyl-peptidase activity | 0.019787251 | GO:0008239 |
| acid-amino acid ligase activity | 0.019787251 | GO:0016881 |
| NEDD8 activating enzyme activity | 0.019787251 | GO:0019781 |
| ribosomal large subunit binding | 0.019787251 | GO:0043023 |
| base-excision repair | 0.022745957 | GO:0006284 |
| carbohydrate phosphorylation | 0.022745957 | GO:0046835 |
| Base excision repair | 0.026908141 | KEGG pathway |
| ribosome binding | 0.039960494 | GO:0043022 |
| ATP binding | 0.039960494 | GO:0005524 |
| serine-type carboxypeptidase activity | 0.04792808 | GO:0004185 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000049 | AT5G65760 (0) | Serine carboxypeptidase S28 family protein |
| CRO_T006623 | AT1G19715 (5.00E-12) | Mannose-binding lectin superfamily protein |
| CRO_T016163 | AT3G08780 (1.00E-39) | unknown protein |
| CRO_T018436 | AT5G08580 (1.00E-58) | Calcium-binding EF hand family protein |
| CRO_T018572 | AT1G30580 (0) | GTP binding |
| CRO_T019056 | - | - |
| CRO_T022003 | AT1G17160 (1.00E-121) | pfkB-like carbohydrate kinase family protein |
| CRO_T023677 | AT1G26330 (6.00E-46) | DNA binding |
| CRO_T025703 | AT2G24990 (2.00E-86) | Serine/threonine-protein kinase Rio1 |
| CRO_T028440 | AT2G36490 (2.00E-14) | DML1|demeter-like 1; ROS1|REPRESSOR OF SILENCING1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000143 | adenine and adenosine salvage II | details |
| TissueCFM000322 | DNA catabolic process, endonucleolytic protein phosphorylation Fanconi anemia pathway Glycosylphosphatidylinositol(GPI)-anchor biosynthesis myosin heavy chain kinase activity chromosome Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000358 | details | |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000764 | base-excision repair response to salt stress Base excision repair precatalytic spliceosome catalytic activity Spliceosome | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM001132 | alpha-1,4-glucan synthase activity starch synthase activity starch biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process Transcription_related, Transcription factor: LOB amyloplast Starch and sucrose metabolism methyltransferase activity | details |
| TissueCFM001228 | Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I DNA-directed RNA polymerase V complex microfibril regulation of production of siRNA involved in chromatin silencing by small RNA RNA-directed DNA methylation production of ta-siRNAs involved in RNA interference THO complex Cul4-RING E3 ubiquitin ligase complex negative regulation of abscisic acid-activated signaling pathway glycerophosphodiester phosphodiesterase activity dipeptidyl-peptidase activity Transcription_related, Transcription factor: C2C2-GATA Transcription_related, Transcription factor: HSF | details |
| TissueCFM001426 | formation of glycosidic bonds, GlycosylTransferases: GTnc acylglycerol lipase activity phospholipase activity pheophorbide a oxygenase activity sucrose-phosphate synthase activity chlorophyllide a oxygenase [overall] activity RNA polymerase I transcription factor complex sucrose synthase activity cell death protein N-linked glycosylation fruit development sucrose metabolic process defense response to bacterium, incompatible interaction chlorophyll catabolic process oligosaccharyltransferase complex chlorophyll a degradation II phospholipid remodeling (phosphatidylcholine, yeast) sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II phosphatidylcholine acyl editing phospholipases flower development lipid catabolic process N-Glycan biosynthesis Porphyrin and chlorophyll metabolism 2 iron, 2 sulfur cluster binding | details |
| TissueCFM001492 | [myelin basic protein]-arginine N-methyltransferase activity 3'-5'-exodeoxyribonuclease activity protein-arginine omega-N monomethyltransferase activity nucleotide-excision repair, DNA gap filling DNA replication proofreading base-excision repair, gap-filling delta DNA polymerase complex oligosaccharyltransferase complex protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine histone arginine methylation FoxO signaling pathway protein N-linked glycosylation DNA-directed DNA polymerase activity DNA binding DNA recombination DNA biosynthetic process vegetative to reproductive phase transition of meristem DNA replication N-Glycan biosynthesis DNA repair nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |