CRO_T021087's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T021087 | SecY protein transport family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G29310 | 0 | SecY protein transport family protein |
| Arabidopsis thaliana | AT1G78720 | 0 | SecY protein transport family protein |
| Arabidopsis thaliana | AT2G34250 | 0 | SecY protein transport family protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001288 | phenylpropanoid biosynthesis, initial reactions Degradation of aromatic compounds Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity Transcription_related, Transcription regulator: LIM phenylalanine ammonia-lyase activity lignin metabolic process Protein export suberin monomers biosynthesis Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: MYB | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T021087 | scaffolds.min_1000bp | scaffold_2953357 | 48609 | 55902 | - |
Gene detail image
| Genome: |
| CRO_T021087 |
| CDS: |
| CRO_T021087 |
| Transcript: |
| CRO_T021087 |
| Protein: |
| CRO_T021087 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0015031 | protein transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K10956 | SEC61A | - | Protein export | ko03060 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00810.15 | ER_lumen_recept | 46 | 185 | 9.6e-47 |
| PF10559.6 | Plug_translocon | 260 | 294 | 1.4e-17 |
| PF00344.17 | SecY | 295 | 676 | 1.2e-75 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 132.2865 | |
| SRR122236 | mixed tissue RA CK | 128.203 | |
| SRR122237 | mixed tissue RB CK | 127.5035 | |
| SRR122250 | callus YE 0.3mg/ml CK | 34.7641 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 54.2498 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 39.5891 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 27.5347 | |
| SRR122242 | callus MeJA 100um 0h | 31.0813 | |
| SRR122246 | callus MeJA 100um 6h | 62.9512 | |
| SRR122240 | callus MeJA 100um 12h | 60.7384 | |
| SRR122241 | callus MeJA 100um 24h | 43.947 | |
| SRR122239 | flower CK 1 | 133.313 | |
| SRR1271859 | flower CK 2 | 110.845 | |
| SRR1144633 | healthy flowers CK | 135.637 | |
| SRR1144634 | flowers PnWB infected | 110.008 | |
| SRR122257 | hairy root CK | 21.7671 | |
| SRR122258 | hairy root MeJA 250um CK | 46.9574 | |
| SRR122259 | hairy root MeJA 250um 24h | 26.2845 | |
| SRR122256 | hairy root RebH F CK | 30.884 | |
| SRR122255 | hairy root TDCi CK | 25.4904 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 55.7254 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 32.8855 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 19.2656 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 20.1923 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 16.3937 | |
| SRR1820238 | Hairy roots CK GUS 3 | 27.3034 | |
| SRR1820233 | Hairy roots CK GUS 4 | 28.4237 | |
| SRR1820326 | Hairy roots CK GUS 5 | 37.02395 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 39.7486 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 27.022 | |
| SRR122252 | immature leaf CK | 74.3881 | |
| SRR342023 | leaf CK 1 | 149.9065 | |
| SRR342022 | leaf CK 2 | 102.579 | |
| SRR342019 | leaf CK 3 | 114.474 | |
| SRR342017 | leaf CK 4 | 130.871 | |
| SRR1271857 | leaf CK 5 | 85.9491 | |
| SRR122251 | mature leaf CK | 112.19 | |
| SRR648705 | root CK 1 | 35.66245 | |
| SRR1271858 | root CK 2 | 59.664 | |
| SRR122254 | root CK 3 | 124.202 | |
| SRR648707 | root MeJA 24h | 37.49815 | |
| SRR648709 | root MeJA 24h DSN normalized | 38.78055 | |
| SRR837772 | seedling CK | 55.3974 | |
| SRR122243 | sterile seedlings AE CK 1 | 57.0562 | |
| SRR122245 | sterile seedlings AE CK 2 | 194.595 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 44.9857 | |
| SRR122253 | stem CK | 36.4099 | |
| SRR646572 | shoots CK | 150.239 | |
| SRR647068 | shoots MeJA 6h 1 | 190.36 | |
| SRR646596 | shoots MeJA 6h 2 | 183.2555 | |
| SRR646604 | shoots MeJA 24h | 29.84805 | |
| SRR924147 | suspension cells EX ORCA2 CK | 44.7509 | |
| SRR924148 | suspension cells EX ORCA3 CK | 50.9263 |