TissueCFM001288's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phenylpropanoid biosynthesis, initial reactions | 0.004253496 | plantCyc |
| Degradation of aromatic compounds | 0.004961899 | KEGG pathway |
| Cytochrome_P450, Cytochrome P450: CYP73A | 0.005909467 | CYP450 family |
| trans-cinnamate 4-monooxygenase activity | 0.008581433 | GO:0016710 |
| Transcription_related, Transcription regulator: LIM | 0.009841982 | TF family |
| phenylalanine ammonia-lyase activity | 0.010723463 | GO:0045548 |
| lignin metabolic process | 0.013897628 | GO:0009808 |
| Protein export | 0.016940251 | KEGG pathway |
| suberin monomers biosynthesis | 0.019045966 | plantCyc |
| Transcription_related, Transcription factor: MYB-related | 0.026163992 | TF family |
| Transcription_related, Transcription factor: MYB | 0.044407635 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000894 | AT2G30490 (0) | ATC4H|CINNAMATE 4-HYDROXYLASE; C4H|cinnamate-4-hydroxylase; REF3|REDUCED EPRDERMAL FLUORESCENCE 3 |
| CRO_T010917 | AT4G37100 (6.00E-18) | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| CRO_T010959 | AT1G49700 (3.00E-09) | Plant protein 1589 of unknown function |
| CRO_T014460 | - | - |
| CRO_T021087 | AT1G29310 (0) | SecY protein transport family protein |
| CRO_T027124 | AT3G49690 (1.00E-65) | ATMYB84|MYB DOMAIN PROTEIN 84; RAX3|REGULATOR OF AXILLARY MERISTEMS3 |
| CRO_T028910 | AT2G38090 (1.00E-43) | Duplicated homeodomain-like superfamily protein |
| CRO_T032738 | AT2G39900 (4.00E-16) | WLIM2a|WLIM2a |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000195 | pectic galactan metabolic process single organismal cell-cell adhesion heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc alkaloid metabolic process phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid | details |
| TissueCFM000196 | lipid catabolic process Cutin, suberine and wax biosynthesis xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc triacylglycerol degradation | details |
| TissueCFM001216 | salicylate glucosides biosynthesis II regulation of pollen tube growth negative regulation of endopeptidase activity pollen tube guidance protein-disulfide reductase activity serine-type endopeptidase inhibitor activity quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis response to wounding pollen tube growth Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription regulator: LIM | details |
| TissueCFM001286 | integral component of membrane external side of plasma membrane Cytochrome_P450, Cytochrome P450: CYP94B Transcription_related, Transcription regulator: LIM Glycerolipid metabolism sphingomyelin phosphodiesterase D activity fatty acid transporter activity fatty acid transport stem vascular tissue pattern formation cutin transport | details |
| TissueCFM001365 | baicalein degradation (hydrogen peroxide detoxification) wogonin metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Fatty acid elongation Glycosaminoglycan degradation MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Transcription_related, Transcription factor: MYB-related very long chain fatty acid biosynthesis I | details |
| TissueCFM001457 | Drug metabolism - cytochrome P450 sulfate adenylyltransferase (ATP) activity 4-coumarate-CoA ligase activity adenylylsulfate kinase activity sulfate activation for sulfonation sulfate reduction II (assimilatory) phenylpropanoid metabolic process Phenylalanine metabolism Sulfur metabolism N,N-dimethylaniline monooxygenase activity formation of glycosidic bonds, GlycosylTransferases: GTnc 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Protein export Flavonoid biosynthesis sulfate assimilation suberin monomers biosynthesis NADP binding Phenylpropanoid biosynthesis protein transport | details |
| TissueCFM001522 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Transcription_related, Transcription factor: G2-like phloem or xylem histogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding response to abscisic acid | details |
| TissueCFM001523 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM Transcription_related, Transcription factor: C2C2-Dof | details |
| TissueCFM001524 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM regulation of transcription, DNA-templated Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: G2-like DNA binding | details |
| TissueCFM001592 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis metal ion binding protein kinase activity N,N-dimethylaniline monooxygenase activity Protein export Plant-pathogen interaction | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001791 | Transcription_related, Transcription factor: C2C2-YABBY specification of organ position abaxial cell fate specification inflorescence meristem growth Cytochrome_P450, Cytochrome P450: CYP98A specification of floral organ identity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity flavonoid 3'-monooxygenase activity fruit development Transcription_related, Transcription factor: NF-YA meristem structural organization Transcription_related, Transcription regulator: TRAF plastoglobule regulation of flower development chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II Mitophagy - animal Phenylpropanoid biosynthesis | details |
| TissueCFM001837 | cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase animal organ development cell surface receptor signaling pathway plasma membrane calcium-dependent phospholipid binding | details |
Expression profiles
 Show details about module gene expression profiling |