CRO_T021123's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T021123 | uracil phosphoribosyltransferase |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G27440 | 1.00E-18 | UKL5|uridine kinase-like 5 |
| Arabidopsis thaliana | AT4G26510 | 4.00E-17 | UKL4|uridine kinase-like 4 |
| Arabidopsis thaliana | AT5G40870 | 6.00E-17 | ATUK/UPRT1|uridine kinase/uracil phosphoribosyltransferase 1;UKL1|URIDINE KINASE-LIKE 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T031225 CRO_T011035 CRO_T015576 CRO_T017324 CRO_T001341 CRO_T020100 CRO_T011161 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000589 | Cytochrome_P450, Cytochrome P450: CYP94D extended VTC2 cycle pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage VTC2 cycle endoplasmic reticulum tubular network organization intracellular protein transport barrier septum site selection uracil salvage UMP biosynthetic process uracil phosphoribosyltransferase activity calcium-dependent ATPase activity GDP-D-glucose phosphorylase activity pyrimidine nucleoside salvage pyrimidine salvage pathway chloroplast fission L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism Autophagy - yeast Pyrimidine metabolism aromatase activity uridine kinase activity glucose metabolic process endoplasmic reticulum tubular network vesicle docking Transcription_related, Transcription factor: M-type vesicle fusion | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T021123 | scaffolds.min_1000bp | scaffold_3060898 | 2967 | 7093 | + |
Gene detail image
| Genome: |
| CRO_T021123 |
| CDS: |
| CRO_T021123 |
| Transcript: |
| CRO_T021123 |
| Protein: |
| CRO_T021123 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004845 | uracil phosphoribosyltransferase activity | molecular_function |
| GO:0004849 | uridine kinase activity | molecular_function |
| GO:0005829 | cytosol | cellular_component |
| GO:0006222 | UMP biosynthetic process | biological_process |
| GO:0006223 | uracil salvage | biological_process |
| GO:0009507 | chloroplast | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043097 | pyrimidine nucleoside salvage | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K00761 | upp | EC:2.4.2.9 | Pyrimidine metabolism | ko00240 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T021123 | - | superpathway of pyrimidine nucleobases salvage | PWY-7208 | |
| CRO_T021123 | - | superpathway of pyrimidine ribonucleosides salvage | PWY-7196 | |
| CRO_T021123 | EC-2.4.2.9 | uracil phosphoribosyltransferase | pyrimidine salvage pathway | - |
| CRO_T021123 | EC-2.4.2.9 | uracil phosphoribosyltransferase | pyrimidine nucleobases salvage I | PWY-7183 |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14681.3 | UPRTase | 137 | 344 | 4.5e-68 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 82.98695 | |
| SRR122236 | mixed tissue RA CK | 17.355 | |
| SRR122237 | mixed tissue RB CK | 17.22645 | |
| SRR122250 | callus YE 0.3mg/ml CK | 24.3457 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 46.6101 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 30.7091 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 30.1186 | |
| SRR122242 | callus MeJA 100um 0h | 25.3916 | |
| SRR122246 | callus MeJA 100um 6h | 35.9213 | |
| SRR122240 | callus MeJA 100um 12h | 31.9071 | |
| SRR122241 | callus MeJA 100um 24h | 34.8753 | |
| SRR122239 | flower CK 1 | 36.0048 | |
| SRR1271859 | flower CK 2 | 18.85205 | |
| SRR1144633 | healthy flowers CK | 43.4605 | |
| SRR1144634 | flowers PnWB infected | 78.55805 | |
| SRR122257 | hairy root CK | 29.2799 | |
| SRR122258 | hairy root MeJA 250um CK | 31.4622 | |
| SRR122259 | hairy root MeJA 250um 24h | 30.3485 | |
| SRR122256 | hairy root RebH F CK | 37.6732 | |
| SRR122255 | hairy root TDCi CK | 32.0197 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 32.1614 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 25.2833 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 38.8454 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 44.5153 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 38.9526 | |
| SRR1820238 | Hairy roots CK GUS 3 | 34.6677 | |
| SRR1820233 | Hairy roots CK GUS 4 | 41.1641 | |
| SRR1820326 | Hairy roots CK GUS 5 | 39.76965 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 23.5913 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 33.7273 | |
| SRR122252 | immature leaf CK | 94.9297 | |
| SRR342023 | leaf CK 1 | 161.297 | |
| SRR342022 | leaf CK 2 | 113.438 | |
| SRR342019 | leaf CK 3 | 104.616 | |
| SRR342017 | leaf CK 4 | 102.422 | |
| SRR1271857 | leaf CK 5 | 64.7725 | |
| SRR122251 | mature leaf CK | 103.931 | |
| SRR648705 | root CK 1 | 94.27435 | |
| SRR1271858 | root CK 2 | 22.5365 | |
| SRR122254 | root CK 3 | 39.0272 | |
| SRR648707 | root MeJA 24h | 114.8285 | |
| SRR648709 | root MeJA 24h DSN normalized | 89.51525 | |
| SRR837772 | seedling CK | 64.08245 | |
| SRR122243 | sterile seedlings AE CK 1 | 76.2568 | |
| SRR122245 | sterile seedlings AE CK 2 | 82.3305 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 67.0744 | |
| SRR122253 | stem CK | 38.2285 | |
| SRR646572 | shoots CK | 85.90445 | |
| SRR647068 | shoots MeJA 6h 1 | 106.068 | |
| SRR646596 | shoots MeJA 6h 2 | 71.1747 | |
| SRR646604 | shoots MeJA 24h | 119.1765 | |
| SRR924147 | suspension cells EX ORCA2 CK | 84.80335 | |
| SRR924148 | suspension cells EX ORCA3 CK | 88.71235 |