TissueCFM000589's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP94D | 0.003190358 | CYP450 family |
| extended VTC2 cycle | 0.006431797 | plantCyc |
| pyrimidine nucleobases salvage I | 0.006431797 | plantCyc |
| superpathway of pyrimidine nucleobases salvage | 0.006431797 | plantCyc |
| superpathway of pyrimidine ribonucleosides salvage | 0.006431797 | plantCyc |
| VTC2 cycle | 0.006431797 | plantCyc |
| endoplasmic reticulum tubular network organization | 0.007118815 | GO:0071786 |
| intracellular protein transport | 0.007118815 | GO:0006886 |
| barrier septum site selection | 0.007118815 | GO:0000918 |
| uracil salvage | 0.007118815 | GO:0006223 |
| UMP biosynthetic process | 0.01055866 | GO:0006222 |
| uracil phosphoribosyltransferase activity | 0.01320047 | GO:0004845 |
| calcium-dependent ATPase activity | 0.01320047 | GO:0030899 |
| GDP-D-glucose phosphorylase activity | 0.01320047 | GO:0080048 |
| pyrimidine nucleoside salvage | 0.015390539 | GO:0043097 |
| pyrimidine salvage pathway | 0.01712083 | plantCyc |
| chloroplast fission | 0.018836373 | GO:0010020 |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.019245295 | plantCyc |
| Ascorbate and aldarate metabolism | 0.022628137 | KEGG pathway |
| Autophagy - yeast | 0.022628137 | KEGG pathway |
| Pyrimidine metabolism | 0.022628137 | KEGG pathway |
| aromatase activity | 0.023737687 | GO:0070330 |
| uridine kinase activity | 0.023737687 | GO:0004849 |
| glucose metabolic process | 0.024702663 | GO:0006006 |
| endoplasmic reticulum tubular network | 0.026405231 | GO:0071782 |
| vesicle docking | 0.030711143 | GO:0048278 |
| Transcription_related, Transcription factor: M-type | 0.033173998 | TF family |
| vesicle fusion | 0.042042966 | GO:0006906 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004833 | AT3G56190 (1.00E-74) | ALPHA-SNAP2|alpha-soluble NSF attachment protein 2 |
| CRO_T008351 | AT5G24020 (2.00E-131) | ARC11|ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11 |
| CRO_T014230 | AT3G17980 (4.00E-78) | AtC2|C2 domain; AtGAP1|homolog of OsGAP1 |
| CRO_T021123 | AT3G27440 (1.00E-18) | UKL5|uridine kinase-like 5 |
| CRO_T022156 | - | - |
| CRO_T023570 | AT4G31080 (3.00E-95) | Protein of unknown function (DUF2296) |
| CRO_T024290 | AT1G63710 (2.00E-101) | CYP86A7|cytochrome P450, family 86, subfamily A, polypeptide 7 |
| CRO_T024781 | AT4G02750 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T025028 | AT1G77980 (1.00E-19) | AGL66|AGAMOUS-like 66 |
| CRO_T026653 | AT4G26850 (4.00E-154) | VTC2|vitamin c defective 2 |
| CRO_T028889 | - | - |
| CRO_T030704 | AT4G17730 (2.00E-87) | SYP23|syntaxin of plants 23 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000729 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage regulation of phosphorylation regulation of nitrogen utilization uracil salvage regulation of fatty acid biosynthetic process uracil phosphoribosyltransferase activity acetylglutamate kinase regulator activity UMP biosynthetic process anthocyanin-containing compound biosynthetic process pyrimidine nucleoside salvage pyrimidine salvage pathway formation of glycosidic bonds, GlycosylTransferases: GTnc uridine kinase activity Pyrimidine metabolism vindoline and vinblastine biosynthesis cell wall organization or biogenesis regulation of catalytic activity response to cytokinin | details |
| TissueCFM001036 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage Cytochrome_P450, Cytochrome P450: CYP94D barrier septum site selection formate catabolic process uracil salvage serine family amino acid biosynthetic process pyrimidine salvage pathway formate dehydrogenase (NAD+) activity uracil phosphoribosyltransferase activity calcium-dependent ATPase activity UMP biosynthetic process Transcription_related, Transcription factor: OFP pyrimidine nucleoside salvage phosphoglycerate dehydrogenase activity chloroplast fission Wnt signaling pathway uridine kinase activity aromatase activity ubiquitin binding regulation of cell shape Pyrimidine metabolism Ras signaling pathway Endocytosis Transcription_related, Transcription factor: M-type | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001249 | calcium-dependent ATPase activity galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity L-ascorbate biosynthesis I (L-galactose pathway) barrier septum site selection Ascorbate and aldarate metabolism Viral carcinogenesis D-arabinono-1,4-lactone oxidase activity chloroplast fission chloroplast envelope nucleosome assembly response to water deprivation phosphoprotein phosphatase activity protein homodimerization activity protein heterodimerization activity | details |
| TissueCFM001652 | Cell cycle - Caulobacter serine-type endopeptidase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity endoribonuclease activity, producing 5'-phosphomonoesters 3'-phospho-5'-adenylyl sulfate transmembrane transport tRNA 3'-trailer cleavage response to reactive oxygen species proteolysis mitochondria-nucleus signaling pathway chloroplast-nucleus signaling pathway integral component of endoplasmic reticulum membrane integral component of Golgi membrane vesicle docking regulation of gene expression vesicle fusion RNA phosphodiester bond hydrolysis, endonucleolytic carbohydrate transport SNARE binding SNAP receptor activity | details |
| TissueCFM001697 | IMP dehydrogenase activity calcium-dependent ATPase activity guanosine ribonucleotides de novo biosynthesis adenosine nucleotides degradation I barrier septum site selection GMP biosynthetic process chloroplast fission Wnt signaling pathway nucleotide binding regulation of cell shape Endocytosis peptidyl-serine phosphorylation | details |
| TissueCFM001824 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 cytoplasmic ubiquitin ligase complex uracil phosphoribosyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity Atg8 ligase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity histone H3-K4 methylation nucleophagy pyrimidine nucleoside salvage UMP biosynthetic process uracil salvage mitophagy pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage autophagosome assembly fatty acid biosynthesis initiation I spermine and spermidine degradation III pyrimidine salvage pathway uridine kinase activity potassium ion binding pyruvate kinase activity chloroplast cytosol Rubisco shunt glycolysis IV (plant cytosol) Autophagy - animal Pyrimidine metabolism glycolysis I (from glucose 6-phosphate) glycolytic process Fatty acid metabolism protein transport fatty acid biosynthetic process | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
Expression profiles
 Show details about module gene expression profiling |