CRO_T022321's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T022321 | hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001370 | farnesyl diphosphate biosynthetic process Z-farnesyl diphosphate synthase activity geranyltranstransferase activity dimethylallyltranstransferase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Terpenoid backbone biosynthesis intracellular organelle cytoplasm serine-type endopeptidase activity proteolysis Golgi apparatus nucleic acid binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T022321 | scaffolds.min_1000bp | scaffold_3039244 | 22680 | 23833 | - |
Gene detail image
| Genome: |
| CRO_T022321 |
| CDS: |
| CRO_T022321 |
| Transcript: |
| CRO_T022321 |
| Protein: |
| CRO_T022321 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.361035 | |
| SRR122236 | mixed tissue RA CK | 0 | |
| SRR122237 | mixed tissue RB CK | 0 | |
| SRR122250 | callus YE 0.3mg/ml CK | 30.4425 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 18.5978 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 14.0904 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 23.6581 | |
| SRR122242 | callus MeJA 100um 0h | 25.4365 | |
| SRR122246 | callus MeJA 100um 6h | 27.6988 | |
| SRR122240 | callus MeJA 100um 12h | 12.7875 | |
| SRR122241 | callus MeJA 100um 24h | 13.161 | |
| SRR122239 | flower CK 1 | 12.606 | |
| SRR1271859 | flower CK 2 | 19.58535 | |
| SRR1144633 | healthy flowers CK | 28.80235 | |
| SRR1144634 | flowers PnWB infected | 12.79945 | |
| SRR122257 | hairy root CK | 4.58429 | |
| SRR122258 | hairy root MeJA 250um CK | 2.07946 | |
| SRR122259 | hairy root MeJA 250um 24h | 0.777892 | |
| SRR122256 | hairy root RebH F CK | 1.62138 | |
| SRR122255 | hairy root TDCi CK | 8.75969 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 1.71359 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 1.30334 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 21.76 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 30.6231 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 31.5544 | |
| SRR1820238 | Hairy roots CK GUS 3 | 12.122 | |
| SRR1820233 | Hairy roots CK GUS 4 | 15.5551 | |
| SRR1820326 | Hairy roots CK GUS 5 | 24.1093 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.747546 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 1.49588 | |
| SRR122252 | immature leaf CK | 17.0448 | |
| SRR342023 | leaf CK 1 | 9.30019 | |
| SRR342022 | leaf CK 2 | 7.796085 | |
| SRR342019 | leaf CK 3 | 8.67151 | |
| SRR342017 | leaf CK 4 | 9.49651 | |
| SRR1271857 | leaf CK 5 | 32.49425 | |
| SRR122251 | mature leaf CK | 5.11838 | |
| SRR648705 | root CK 1 | 2.775725 | |
| SRR1271858 | root CK 2 | 11.736845 | |
| SRR122254 | root CK 3 | 5.15367 | |
| SRR648707 | root MeJA 24h | 3.490705 | |
| SRR648709 | root MeJA 24h DSN normalized | 5.787 | |
| SRR837772 | seedling CK | 1.45499 | |
| SRR122243 | sterile seedlings AE CK 1 | 1.20071 | |
| SRR122245 | sterile seedlings AE CK 2 | 1.08469 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 1.48481 | |
| SRR122253 | stem CK | 6.85813 | |
| SRR646572 | shoots CK | 16.5738 | |
| SRR647068 | shoots MeJA 6h 1 | 27.5679 | |
| SRR646596 | shoots MeJA 6h 2 | 19.0907 | |
| SRR646604 | shoots MeJA 24h | 19.199 | |
| SRR924147 | suspension cells EX ORCA2 CK | 2.436775 | |
| SRR924148 | suspension cells EX ORCA3 CK | 4.27324 |