CFinderADM001370's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| farnesyl diphosphate biosynthetic process | 9.60E-06 | GO:0045337 |
| Z-farnesyl diphosphate synthase activity | 1.01E-05 | GO:0033850 |
| geranyltranstransferase activity | 2.53E-05 | GO:0004337 |
| dimethylallyltranstransferase activity | 6.18E-05 | GO:0004161 |
| trans, trans-farnesyl diphosphate biosynthesis | 7.07E-05 | plantCyc |
| geranylgeranyl diphosphate biosynthesis | 7.07E-05 | plantCyc |
| polyisoprenoid biosynthesis | 7.07E-05 | plantCyc |
| superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | 7.07E-05 | plantCyc |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 7.07E-05 | plantCyc |
| Terpenoid backbone biosynthesis | 0.000471745 | KEGG pathway |
| intracellular organelle | 0.000524337 | GO:0043229 |
| cytoplasm | 0.000823066 | GO:0005737 |
| serine-type endopeptidase activity | 0.003085531 | GO:0004252 |
| proteolysis | 0.0103235 | GO:0006508 |
| Golgi apparatus | 0.011744992 | GO:0005794 |
| nucleic acid binding | 0.022754363 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015546 | AT5G47770 (3.00E-144) | FPS1|farnesyl diphosphate synthase 1 |
| CRO_T022321 | - | - |
| CRO_T023555 | AT1G72480 (0) | Lung seven transmembrane receptor family protein |
| CRO_T026584 | AT3G10440 (4.00E-17) | Shugoshin C terminus |
| CRO_T030532 | AT1G69020 (0) | Prolyl oligopeptidase family protein |
| CRO_T033656 | AT2G27040 (0) | AGO4|ARGONAUTE 4; OCP11|OVEREXPRESSOR OF CATIONIC PEROXIDASE 11 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000406 | Z-farnesyl diphosphate synthase activity farnesyl diphosphate biosynthetic process geranyltranstransferase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) dimethylallyltranstransferase activity intracellular organelle Terpenoid backbone biosynthesis kinesin complex microtubule-based movement single-organism process microtubule motor activity ATPase activity nucleotide binding cytoplasm | details |
| CFinderADM001028 | Nucleotide excision repair response to radiation central vacuole oxidoreductase activity, acting on the CH-CH group of donors glycerol channel activity endonuclease activity water channel activity damaged DNA binding glycerol transport water transport cellular water homeostasis ion transmembrane transport plant-type vacuole membrane nucleic acid phosphodiester bond hydrolysis DNA repair lipid metabolic process integral component of plasma membrane nucleic acid binding | details |
| CFinderADM001036 | Z-farnesyl diphosphate synthase activity farnesyl diphosphate biosynthetic process geranyltranstransferase activity dimethylallyltranstransferase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Terpenoid backbone biosynthesis membrane part cellular process metabolic process nucleic acid binding hydrolase activity cytoplasm | details |
| CFinderADM001371 | farnesyl diphosphate biosynthetic process Z-farnesyl diphosphate synthase activity geranyltranstransferase activity dimethylallyltranstransferase activity trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Terpenoid backbone biosynthesis Golgi apparatus | details |
| CFinderADM001508 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Golgi apparatus protein kinase activity protein phosphorylation integral component of membrane | details |
| CFinderADM001589 | metabolic process nucleic acid binding hydrolase activity | details |
| CFinderADM001615 | microtubule response to radiation condensed chromosome Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 Transcription_related, Transcription regulator: DDT Cell cycle - yeast Nucleotide excision repair Phagosome mitotic chromosome condensation Cell cycle - Caulobacter adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 CDP-diacylglycerol biosynthesis I proteolysis cellulose catabolic process microtubule-based process diacylglycerol and triacylglycerol biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc damaged DNA binding structural constituent of cytoskeleton endonuclease activity ATP-dependent peptidase activity cellulase activity Glycerolipid metabolism protein catabolic process mitochondrial matrix kinesin complex microtubule-based movement nucleic acid phosphodiester bond hydrolysis microtubule motor activity DNA repair ATPase activity microtubule binding unfolded protein binding ATP binding cytoplasm protein folding serine-type endopeptidase activity GTPase activity | details |
| CFinderADM001774 | MAPK signaling pathway - yeast nucleic acid binding protein domain specific binding DNA-directed RNA polymerase activity helicase activity DNA repair vesicle-mediated transport serine-type endopeptidase activity proteolysis transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |