CRO_T023867's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T023867 | RING/U-box superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G15975 | 5.00E-19 | RING/U-box superfamily protein |
| Arabidopsis thaliana | AT5G17600 | 4.00E-17 | RING/U-box superfamily protein |
| Arabidopsis thaliana | AT1G23980 | 6.00E-17 | RING/U-box superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T015868 CRO_T016267 CRO_T005623 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001081 | phosphoribosylglycinamide formyltransferase activity 5-aminoimidazole ribonucleotide biosynthesis I tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate 'de novo' IMP biosynthetic process DNA binding Transcription_related, Transcription factor: C2C2-Dof proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Transcription_related, Transcription factor: MYB Purine metabolism Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated zinc ion binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T023867 | scaffolds.min_1000bp | scaffold_2990568 | 31600 | 33087 | - |
Gene detail image
| Genome: |
| CRO_T023867 |
| CDS: |
| CRO_T023867 |
| Transcript: |
| CRO_T023867 |
| Protein: |
| CRO_T023867 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13639.3 | zf-RING_2 | 227 | 270 | 1.1e-12 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 9.047805 | |
| SRR122236 | mixed tissue RA CK | 3.907685 | |
| SRR122237 | mixed tissue RB CK | 4.22504 | |
| SRR122250 | callus YE 0.3mg/ml CK | 1.17064 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 2.08588 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 1.39221 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 1.54658 | |
| SRR122242 | callus MeJA 100um 0h | 1.35137 | |
| SRR122246 | callus MeJA 100um 6h | 0.919887 | |
| SRR122240 | callus MeJA 100um 12h | 1.01239 | |
| SRR122241 | callus MeJA 100um 24h | 0.101219 | |
| SRR122239 | flower CK 1 | 5.05527 | |
| SRR1271859 | flower CK 2 | 9.286345 | |
| SRR1144633 | healthy flowers CK | 13.1774 | |
| SRR1144634 | flowers PnWB infected | 12.258 | |
| SRR122257 | hairy root CK | 6.03775 | |
| SRR122258 | hairy root MeJA 250um CK | 2.53219 | |
| SRR122259 | hairy root MeJA 250um 24h | 1.86957 | |
| SRR122256 | hairy root RebH F CK | 11.6384 | |
| SRR122255 | hairy root TDCi CK | 5.00316 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 2.25141 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0.50119 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 7.32262 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 7.96139 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 12.7687 | |
| SRR1820238 | Hairy roots CK GUS 3 | 6.47331 | |
| SRR1820233 | Hairy roots CK GUS 4 | 6.13261 | |
| SRR1820326 | Hairy roots CK GUS 5 | 11.8785 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.89459 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 4.08737 | |
| SRR122252 | immature leaf CK | 9.52677 | |
| SRR342023 | leaf CK 1 | 8.195135 | |
| SRR342022 | leaf CK 2 | 5.7046 | |
| SRR342019 | leaf CK 3 | 5.47064 | |
| SRR342017 | leaf CK 4 | 9.552855 | |
| SRR1271857 | leaf CK 5 | 9.9263 | |
| SRR122251 | mature leaf CK | 7.10749 | |
| SRR648705 | root CK 1 | 0.337773 | |
| SRR1271858 | root CK 2 | 67.6745 | |
| SRR122254 | root CK 3 | 14.4742 | |
| SRR648707 | root MeJA 24h | 0.486973 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.413202 | |
| SRR837772 | seedling CK | 15.39085 | |
| SRR122243 | sterile seedlings AE CK 1 | 5.19438 | |
| SRR122245 | sterile seedlings AE CK 2 | 2.98929 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 4.13954 | |
| SRR122253 | stem CK | 11.5552 | |
| SRR646572 | shoots CK | 8.59663 | |
| SRR647068 | shoots MeJA 6h 1 | 4.18206 | |
| SRR646596 | shoots MeJA 6h 2 | 5.34969 | |
| SRR646604 | shoots MeJA 24h | 7.111965 | |
| SRR924147 | suspension cells EX ORCA2 CK | 4.1133 | |
| SRR924148 | suspension cells EX ORCA3 CK | 3.74187 |