CFinderADM001081's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphoribosylglycinamide formyltransferase activity | 5.13E-06 | GO:0004644 |
| 5-aminoimidazole ribonucleotide biosynthesis I | 1.18E-05 | plantCyc |
| tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate | 1.18E-05 | plantCyc |
| 'de novo' IMP biosynthetic process | 6.35E-05 | GO:0006189 |
| DNA binding | 0.000171289 | GO:0003677 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.00034537 | TF family |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.000946557 | GO:0043161 |
| ubiquitin protein ligase activity | 0.00180172 | GO:0061630 |
| Transcription_related, Transcription factor: MYB | 0.002384213 | TF family |
| Purine metabolism | 0.002677365 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.014366255 | ubs family |
| regulation of transcription, DNA-templated | 0.02757984 | GO:0006355 |
| zinc ion binding | 0.047309879 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000422 | AT5G58630 (5.00E-15) | TRM31|TON1 Recruiting Motif 31 |
| CRO_T004407 | AT1G07640 (2.00E-24) | URP3|UAS-TAGGED ROOT PATTERNING3 |
| CRO_T014262 | AT1G31220 (2.00E-86) | Formyl transferase |
| CRO_T017342 | AT4G05100 (6.00E-80) | AtMYB74|myb domain protein 74 |
| CRO_T023867 | AT4G15975 (5.00E-19) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000867 | L-histidine biosynthesis L-glutamine degradation I Biosynthesis of amino acids 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity phosphoribosylglycinamide formyltransferase activity oxo-acid-lyase activity transferase activity, transferring pentosyl groups imidazoleglycerol-phosphate synthase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I riboflavin synthase complex tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate mitochondrial proton-transporting ATP synthase complex assembly auxin efflux transmembrane transporter activity flavin biosynthesis I (bacteria and plants) Folate biosynthesis Riboflavin metabolism tetrahydrofolate biosynthesis II 'de novo' IMP biosynthetic process riboflavin biosynthetic process histidine biosynthetic process folic acid-containing compound biosynthetic process auxin homeostasis protein complex cellular amino acid biosynthetic process auxin polar transport auxin-activated signaling pathway ligase activity chloroplast embryo development ending in seed dormancy mitochondrial inner membrane Purine metabolism | details |
| CFinderADM000933 | chloroplast stroma riboflavin synthase complex phosphoribosylglycinamide formyltransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate pyruvate dehydrogenase (acetyl-transferring) activity acetyl-CoA biosynthetic process from pyruvate folic acid-containing compound biosynthetic process riboflavin biosynthetic process 'de novo' IMP biosynthetic process flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc amino acid binding unfolded protein binding response to stress ligase activity protein folding chloroplast thylakoid membrane cell wall Purine metabolism Protein processing in endoplasmic reticulum Carbon metabolism | details |
Expression profiles
 Show details about module gene expression profiling |