CRO_T025440's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T025440 | Eukaryotic translation initiation factor 2 subunit |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G40290 | 5.00E-54 | Eukaryotic translation initiation factor 2 subunit 1 |
| Arabidopsis thaliana | AT2G40290 | 5.00E-54 | Eukaryotic translation initiation factor 2 subunit 1 |
| Arabidopsis thaliana | AT5G05470 | 6.00E-50 | EIF2 ALPHA|eukaryotic translation initiation factor 2 alpha subunit |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000165 | stachyose degradation multi-eIF complex eukaryotic translation initiation factor 2 complex Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc eukaryotic translation initiation factor 2B complex mannan catabolic process translation protein import into nucleus xylan catabolic process maturation of LSU-rRNA | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T025440 | scaffolds.min_1000bp | scaffold_3060943 | 99673 | 101076 | + |
Gene detail image
| Genome: |
| CRO_T025440 |
| CDS: |
| CRO_T025440 |
| Transcript: |
| CRO_T025440 |
| Protein: |
| CRO_T025440 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003743 | translation initiation factor activity | molecular_function |
| GO:0005840 | ribosome | cellular_component |
| GO:0005850 | eukaryotic translation initiation factor 2 complex | cellular_component |
| GO:0005851 | eukaryotic translation initiation factor 2B complex | cellular_component |
| GO:0006413 | translational initiation | biological_process |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0043614 | multi-eIF complex | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K03237 | EIF2S1 | - | RNA transport | ko03013 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00575.20 | S1 | 18 | 92 | 6.9e-13 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 86.9957 | |
| SRR122236 | mixed tissue RA CK | 182.291 | |
| SRR122237 | mixed tissue RB CK | 176.457 | |
| SRR122250 | callus YE 0.3mg/ml CK | 137.247 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 128.158 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 126.29 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 166.221 | |
| SRR122242 | callus MeJA 100um 0h | 166.01 | |
| SRR122246 | callus MeJA 100um 6h | 96.0562 | |
| SRR122240 | callus MeJA 100um 12h | 108.854 | |
| SRR122241 | callus MeJA 100um 24h | 173.361 | |
| SRR122239 | flower CK 1 | 127.08 | |
| SRR1271859 | flower CK 2 | 92.23595 | |
| SRR1144633 | healthy flowers CK | 115.655 | |
| SRR1144634 | flowers PnWB infected | 123.445 | |
| SRR122257 | hairy root CK | 129.867 | |
| SRR122258 | hairy root MeJA 250um CK | 112.359 | |
| SRR122259 | hairy root MeJA 250um 24h | 119.333 | |
| SRR122256 | hairy root RebH F CK | 125.469 | |
| SRR122255 | hairy root TDCi CK | 113.036 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 120.63 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 109.3 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 153.348 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 136.853 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 115.889 | |
| SRR1820238 | Hairy roots CK GUS 3 | 138.129 | |
| SRR1820233 | Hairy roots CK GUS 4 | 139.188 | |
| SRR1820326 | Hairy roots CK GUS 5 | 148.45 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 162.478 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 95.3148 | |
| SRR122252 | immature leaf CK | 159.926 | |
| SRR342023 | leaf CK 1 | 206.4235 | |
| SRR342022 | leaf CK 2 | 168.5855 | |
| SRR342019 | leaf CK 3 | 119.7165 | |
| SRR342017 | leaf CK 4 | 107.2255 | |
| SRR1271857 | leaf CK 5 | 87.9217 | |
| SRR122251 | mature leaf CK | 108.472 | |
| SRR648705 | root CK 1 | 162.465 | |
| SRR1271858 | root CK 2 | 128.054 | |
| SRR122254 | root CK 3 | 115.578 | |
| SRR648707 | root MeJA 24h | 183.9125 | |
| SRR648709 | root MeJA 24h DSN normalized | 176.5955 | |
| SRR837772 | seedling CK | 101.70675 | |
| SRR122243 | sterile seedlings AE CK 1 | 154.11 | |
| SRR122245 | sterile seedlings AE CK 2 | 173.608 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 159.824 | |
| SRR122253 | stem CK | 118.312 | |
| SRR646572 | shoots CK | 172.1035 | |
| SRR647068 | shoots MeJA 6h 1 | 175.519 | |
| SRR646596 | shoots MeJA 6h 2 | 180.1335 | |
| SRR646604 | shoots MeJA 24h | 155.004 | |
| SRR924147 | suspension cells EX ORCA2 CK | 178.0695 | |
| SRR924148 | suspension cells EX ORCA3 CK | 169.292 |