TreatCFM000165's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| stachyose degradation | 0.010352088 | plantCyc |
| multi-eIF complex | 0.019484324 | GO:0043614 |
| eukaryotic translation initiation factor 2 complex | 0.019484324 | GO:0005850 |
| Ribosome | 0.019484324 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.03419438 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.03419438 | cazy family |
| eukaryotic translation initiation factor 2B complex | 0.035153964 | GO:0005851 |
| mannan catabolic process | 0.045016792 | GO:0046355 |
| translation | 0.045016792 | GO:0006412 |
| protein import into nucleus | 0.045016792 | GO:0006606 |
| xylan catabolic process | 0.045016792 | GO:0045493 |
| maturation of LSU-rRNA | 0.045016792 | GO:0000470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003934 | AT1G63020 (0) | NRPD1A|nuclear RNA polymerase D1A; POL IVA|NUCLEAR RNA POLYMERASE D 1A; SMD2|SILENCING MOVEMENT DEFICIENT 2 |
| CRO_T004211 | AT2G20680 (9.00E-161) | MAN2|endo-beta-mannase 2 |
| CRO_T010566 | AT2G21010 (2.00E-15) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T013488 | AT5G46330 (7.00E-29) | FLS2|FLAGELLIN-SENSITIVE 2 |
| CRO_T014951 | AT1G07630 (4.00E-28) | PLL5|pol-like 5 |
| CRO_T015564 | AT3G62870 (3.00E-110) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T017275 | AT1G55740 (0) | AtSIP1|seed imbibition 1; RS1|raffinose synthase 1 |
| CRO_T018059 | AT2G32060 (9.00E-44) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| CRO_T020346 | AT1G55860 (6.00E-16) | UPL1|ubiquitin-protein ligase 1 |
| CRO_T020854 | AT2G14690 (4.00E-42) | Glycosyl hydrolase superfamily protein |
| CRO_T022174 | AT3G02680 (3.00E-80) | NBS1|nijmegen breakage syndrome 1 |
| CRO_T023779 | AT5G48250 (1.00E-97) | BBX8|B-box domain protein 8 |
| CRO_T025440 | AT2G40290 (5.00E-54) | Eukaryotic translation initiation factor 2 subunit 1 |
| CRO_T028098 | AT1G79350 (1.00E-13) | EMB1135|embryo defective 1135 |
| CRO_T029289 | AT5G53800 (6.00E-62) | unknown protein |
| CRO_T030107 | AT5G22750 (0) | RAD5; RAD5A|DNA/RNA helicase protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000136 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity macromolecule depalmitoylation regulation of vesicle fusion biological regulation activation of GTPase activity Rab GTPase binding GTPase activator activity RNA secondary structure unwinding Fatty acid metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD fatty acid biosynthetic process | details |
| TreatCFM000572 | Homologous recombination ER to Golgi vesicle-mediated transport drug transmembrane transport drug transmembrane transporter activity antiporter activity | details |
| TreatCFM000802 | Ubiquitin mediated proteolysis protein complex integral component of membrane calmodulin binding lipid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000866 | oleate biosynthesis I (plants) ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process acyl-[acyl-carrier-protein] hydrolase activity palmitoyl-(protein) hydrolase activity suberin biosynthetic process macromolecule depalmitoylation biological regulation | details |
| TreatCFM000907 | sucrose degradation III (sucrose invertase) regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process Fructose and mannose metabolism Ubiquitin_Proteasome_system, DUB: OTU D-ribose metabolic process ribokinase activity fructokinase activity carbohydrate phosphorylation nucleotidyltransferase activity regulation of catalytic activity chloroplast thylakoid | details |
| TreatCFM000985 | transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex ATP binding RNA polymerase III activity cytosolic large ribosomal subunit ESCRT I complex NURF complex Transcription_related, Transcription regulator: SNF2 mitochondrial intermembrane space biotin-carboxyl carrier protein assembly fatty acid biosynthesis initiation I seleno-amino acid biosynthesis CCR4-NOT complex octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase Transcription_related, Transcription factor: BES1 cystathionine gamma-lyase activity phosphatidic acid transporter activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity protein complex binding NADPH:quinone reductase activity cystathionine beta-lyase activity biotin carboxylase activity nucleosome binding | details |
| TreatCFM001266 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc xylan catabolic process Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER Golgi transport complex Transcription_related, Transcription factor: FAR1 cytosolic large ribosomal subunit | details |
| TreatCFM001267 | signal transduction cytosolic large ribosomal subunit Ribosome translation maturation of LSU-rRNA transmembrane receptor protein tyrosine kinase activity RNA binding Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X peptidyl-tyrosine phosphorylation phosphatidylinositol binding Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001268 | cytosolic large ribosomal subunit ESCRT I complex seleno-amino acid biosynthesis L-cysteine desulfhydrase activity cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) protein complex binding cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process translation protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA binding maturation of LSU-rRNA Ribosome Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001276 | polyamine catabolic process polyamine oxidase activity spermine and spermidine degradation III Arginine and proline metabolism flavin adenine dinucleotide binding peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001347 | nuclear ubiquitin ligase complex Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) positive regulation of translational elongation organ senescence detection of nutrient vegetative phase change translational frameshifting positive regulation of translational termination developmental process involved in reproduction sugar mediated signaling pathway primary root development Apelin signaling pathway RNA degradation abscisic acid-activated signaling pathway translational initiation | details |
| TreatCFM001456 | formation of glycosidic bonds, GlycosylTransferases: GTnc eukaryotic translation initiation factor 2 complex multi-eIF complex eukaryotic translation initiation factor 2B complex Transcription_related, Transcription factor: FAR1 malate metabolic process cutin biosynthesis gluconeogenesis I long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis xylan biosynthesis malate dehydrogenase (decarboxylating) (NAD+) activity eukaryotic 48S preinitiation complex cell part translational initiation | details |
| TreatCFM001486 | integral component of chloroplast outer membrane cation transport RNA secondary structure unwinding ER to Golgi vesicle-mediated transport ion transmembrane transport ion channel activity chloroplast inner membrane | details |
| TreatCFM001502 | Ribosome translation positive regulation of translational fidelity nucleosome assembly structural constituent of ribosome Transcription_related, Transcription factor: Orphans | details |
| TreatCFM001615 | integral component of membrane Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis xylan biosynthesis xylogalacturonan biosynthesis calcium:proton antiporter activity Ribosome biogenesis in eukaryotes formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: NAC cellulose synthase (UDP-forming) activity | details |
| TreatCFM001701 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SWI/SNF-BAF60b Fructose and mannose metabolism Galactose metabolism mannan catabolic process translational initiation ribosome binding mannan endo-1,4-beta-mannosidase activity translation elongation factor activity protein dephosphorylation protein serine/threonine phosphatase activity | details |
| TreatCFM001776 | multi-eIF complex eukaryotic translation initiation factor 2 complex myo-inositol biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) L-histidine biosynthesis phytate degradation I histidinol-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process eukaryotic translation initiation factor 2B complex histidine biosynthetic process mannan catabolic process inositol monophosphate 1-phosphatase activity phosphatidylinositol phosphorylation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII mannan endo-1,4-beta-mannosidase activity ribosome binding translational initiation Fructose and mannose metabolism NF-kappa B signaling pathway eukaryotic 48S preinitiation complex | details |
| TreatCFM001853 | pyruvate decarboxylation to acetyl CoA Ubiquitin_Proteasome_system, E3 adaptor: DWD drug transmembrane transporter activity protein binding transferase activity, transferring acyl groups antiporter activity biological regulation | details |
| TreatCFM001890 | nonphotochemical quenching integral component of membrane formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |