CRO_T026024's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T026024 | C2H2 and C2HC zinc fingers superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G66730 | 8.00E-56 | ENY|ENHYDROUS;IDD1|INDETERMINATE DOMAIN 1 |
| Arabidopsis thaliana | AT5G60470 | 1.00E-55 | C2H2 and C2HC zinc fingers superfamily protein |
| Arabidopsis thaliana | AT3G50700 | 2.00E-55 | AtIDD2|indeterminate(ID)-domain 2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000101 | ajmaline and sarpagine biosynthesis RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Transcription_related, Transcription factor: C2H2 DNA integration DNA recombination | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T026024 | scaffolds.min_1000bp | scaffold_3061792 | 27219 | 27822 | + |
Gene detail image
| Genome: |
| CRO_T026024 |
| CDS: |
| CRO_T026024 |
| Transcript: |
| CRO_T026024 |
| Protein: |
| CRO_T026024 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding | molecular_function |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0 | |
| SRR122236 | mixed tissue RA CK | 4.55222 | |
| SRR122237 | mixed tissue RB CK | 4.03458 | |
| SRR122250 | callus YE 0.3mg/ml CK | 31.8856 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 14.4531 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 15.4448 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 20.0542 | |
| SRR122242 | callus MeJA 100um 0h | 51.5236 | |
| SRR122246 | callus MeJA 100um 6h | 6.13358 | |
| SRR122240 | callus MeJA 100um 12h | 9.34446 | |
| SRR122241 | callus MeJA 100um 24h | 19.2347 | |
| SRR122239 | flower CK 1 | 0 | |
| SRR1271859 | flower CK 2 | 0 | |
| SRR1144633 | healthy flowers CK | 0 | |
| SRR1144634 | flowers PnWB infected | 0 | |
| SRR122257 | hairy root CK | 23.8964 | |
| SRR122258 | hairy root MeJA 250um CK | 7.42897 | |
| SRR122259 | hairy root MeJA 250um 24h | 5.30547 | |
| SRR122256 | hairy root RebH F CK | 42.9168 | |
| SRR122255 | hairy root TDCi CK | 32.6332 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 16.6961 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 12.6989 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 3.75753 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 3.10753 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 14.7698 | |
| SRR1820238 | Hairy roots CK GUS 3 | 23.6614 | |
| SRR1820233 | Hairy roots CK GUS 4 | 12.9267 | |
| SRR1820326 | Hairy roots CK GUS 5 | 32.34965 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 14.8353 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 9.14121 | |
| SRR122252 | immature leaf CK | 0 | |
| SRR342023 | leaf CK 1 | 0 | |
| SRR342022 | leaf CK 2 | 0 | |
| SRR342019 | leaf CK 3 | 0 | |
| SRR342017 | leaf CK 4 | 0 | |
| SRR1271857 | leaf CK 5 | 0 | |
| SRR122251 | mature leaf CK | 0 | |
| SRR648705 | root CK 1 | 0.1639585 | |
| SRR1271858 | root CK 2 | 15.87655 | |
| SRR122254 | root CK 3 | 1.43468 | |
| SRR648707 | root MeJA 24h | 2.053935 | |
| SRR648709 | root MeJA 24h DSN normalized | 1.42581 | |
| SRR837772 | seedling CK | 0.1996125 | |
| SRR122243 | sterile seedlings AE CK 1 | 5.84944 | |
| SRR122245 | sterile seedlings AE CK 2 | 3.52284 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 3.25506 | |
| SRR122253 | stem CK | 37.8065 | |
| SRR646572 | shoots CK | 0.209231 | |
| SRR647068 | shoots MeJA 6h 1 | 0 | |
| SRR646596 | shoots MeJA 6h 2 | 0.0864615 | |
| SRR646604 | shoots MeJA 24h | 0 | |
| SRR924147 | suspension cells EX ORCA2 CK | 1.889655 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0.2205075 |