TreatCFM000101's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ajmaline and sarpagine biosynthesis | 0.006601998 | plantCyc |
| RNA-dependent DNA biosynthetic process | 0.007084392 | GO:0006278 |
| RNA-directed DNA polymerase activity | 0.01349211 | GO:0003964 |
| Transcription_related, Transcription factor: C2H2 | 0.016026902 | TF family |
| DNA integration | 0.016514134 | GO:0015074 |
| DNA recombination | 0.019640521 | GO:0006310 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001817 | AT1G71730 (1.00E-22) | unknown protein |
| CRO_T005552 | AT5G48480 (4.00E-21) | Lactoylglutathione lyase / glyoxalase I family protein |
| CRO_T011666 | ATMG00860 (5.00E-05) | ORF158|DNA/RNA polymerases superfamily protein |
| CRO_T015724 | AT3G55350 (4.00E-24) | PIF / Ping-Pong family of plant transposases |
| CRO_T025239 | AT5G47950 (1.00E-44) | HXXXD-type acyl-transferase family protein |
| CRO_T026024 | AT5G66730 (8.00E-56) | ENY|ENHYDROUS; IDD1|INDETERMINATE DOMAIN 1 |
| CRO_T029190 | AT3G61770 (2.00E-83) | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000002 | phosphogluconate dehydrogenase (decarboxylating) activity NAD binding | details |
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000036 | adenosylmethionine decarboxylase activity spermidine biosynthetic process spermine biosynthetic process spermidine biosynthesis I spermine biosynthesis Cysteine and methionine metabolism Transcription_related, Transcription factor: NAC | details |
| TreatCFM000083 | vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity raucaffricine beta-glucosidase activity alkaloid biosynthetic process Transcription_related, Transcription factor: NAC Starch and sucrose metabolism | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000099 | Spliceosome sulfate activation for sulfonation sulfate reduction II (assimilatory) Transcription_related, Transcription factor: NAC Ubiquitin_Proteasome_system, DUB: JAMM HTLV-I infection L-valine degradation I | details |
| TreatCFM000100 | Transcription_related, Transcription factor: WRKY Galactose metabolism | details |
| TreatCFM000102 | RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity DNA integration DNA recombination aspartic-type endopeptidase activity | details |
| TreatCFM000104 | integral component of mitochondrial outer membrane nucleolar ribonuclease P complex auxin catabolic process | details |
| TreatCFM000183 | calcium ion transport Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000187 | intracellular part response to biotic stimulus defense response Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM000188 | Basal transcription factors Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity | details |
| TreatCFM000197 | Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000246 | Legionellosis rRNA (adenine-N6,N6-)-dimethyltransferase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: MYB-related rRNA methylation cell fate specification substrate-specific transmembrane transporter activity carbohydrate transport ER to Golgi vesicle-mediated transport cell division small GTPase mediated signal transduction | details |
| TreatCFM000279 | Ubiquitin_Proteasome_system, DUB: JAMM Golgi vesicle budding phospholipid translocation Proteasome phospholipid-translocating ATPase activity proteasome-mediated ubiquitin-dependent protein catabolic process proteasome complex | details |
| TreatCFM000301 | vindoline and vinblastine biosynthesis mRNA surveillance pathway | details |
| TreatCFM000318 | details | |
| TreatCFM000333 | details | |
| TreatCFM000334 | L-amino acid transport L-alpha-amino acid transmembrane transport L-amino acid transmembrane transporter activity protein disulfide isomerase activity antiporter activity cell redox homeostasis | details |
| TreatCFM000335 | chromosome organization DNA metabolic process helicase activity | details |
| TreatCFM000342 | integral component of membrane chloroplast inner membrane ATP synthesis coupled electron transport photosynthesis, light reaction hydrogen ion transmembrane transporter activity quinone binding carbohydrate binding NADH dehydrogenase (ubiquinone) activity hydrogen ion transmembrane transport Photosynthesis | details |
| TreatCFM000346 | DNA integration plastid | details |
| TreatCFM000403 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000415 | 3'-5'-exoribonuclease activity U6 snRNA 3'-end processing mRNA processing RNA splicing RNA phosphodiester bond hydrolysis, exonucleolytic ion transport single-organism process | details |
| TreatCFM000417 | secondary active sulfate transmembrane transporter activity sulfate transmembrane transport integral component of plasma membrane kinase activity | details |
| TreatCFM000449 | nucleolar ribonuclease P complex auxin catabolic process ribonuclease P activity RNA phosphodiester bond hydrolysis, endonucleolytic ethylene biosynthesis I (plants) gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) leucodelphinidin biosynthesis pinobanksin biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) dioxygenase activity | details |
| TreatCFM000471 | details | |
| TreatCFM000478 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM000509 | Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase guiding stereospecific synthesis activity regulation of catalytic activity phenylpropanoid biosynthetic process | details |
| TreatCFM000526 | Cytochrome_P450, Cytochrome P450: CYP78A | details |
| TreatCFM000563 | DNA mediated transformation Transcription_related, Transcription factor: WRKY amino acid transmembrane transport Viral carcinogenesis MAPK signaling pathway - plant | details |
| TreatCFM000622 | serine-type carboxypeptidase activity | details |
| TreatCFM000635 | DNA mediated transformation Viral carcinogenesis | details |
| TreatCFM000699 | cell death L-amino acid transport leaf senescence L-alpha-amino acid transmembrane transport ethylene biosynthetic process L-amino acid transmembrane transporter activity protein disulfide isomerase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box cell redox homeostasis defense response viral nucleocapsid cell intracellular ribonucleoprotein complex antiporter activity | details |
| TreatCFM000760 | details | |
| TreatCFM000763 | details | |
| TreatCFM000767 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase protein serine/threonine/tyrosine kinase activity protein kinase activity magnesium ion transport magnesium ion transmembrane transport ATP binding magnesium ion transmembrane transporter activity protein phosphorylation | details |
| TreatCFM000863 | mRNA surveillance pathway | details |
| TreatCFM000927 | details | |
| TreatCFM000980 | proteasome complex RNA-dependent DNA biosynthetic process RNA-directed DNA polymerase activity Ubiquitin_Proteasome_system, DUB: JAMM Proteasome DNA integration DNA recombination Transcription_related, Transcription factor: bHLH proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001059 | quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid biosynthetic process flavonoid glucuronidation | details |
| TreatCFM001163 | secologanin and strictosidine biosynthesis Cytochrome_P450, Cytochrome P450: CYP72A Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001194 | formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of membrane cell protein disulfide isomerase activity transmembrane transporter activity cell redox homeostasis | details |
| TreatCFM001317 | serine-type carboxypeptidase activity proteolysis | details |
| TreatCFM001318 | Transcriptional misregulation in cancers mitotic cell cycle checkpoint | details |
| TreatCFM001374 | serine family amino acid biosynthetic process formate catabolic process phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity hydrogen peroxide catabolic process response to oxidative stress cellular oxidant detoxification oxidation-reduction process peroxidase activity heterocyclic compound binding organic cyclic compound binding NAD binding | details |
| TreatCFM001598 | details |
Expression profiles
 Show details about module gene expression profiling |