CRO_T029736's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T029736 | voltage dependent anion channel |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G57490 | 8.00E-99 | ATVDAC4|VOLTAGE DEPENDENT ANION CHANNEL 4 |
| Arabidopsis thaliana | AT3G01280 | 4.00E-68 | ATVDAC1|VOLTAGE DEPENDENT ANION CHANNEL 1 |
| Arabidopsis thaliana | AT5G15090 | 6.00E-67 | ATVDAC3|VOLTAGE DEPENDENT ANION CHANNEL 3 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001650 | succinate transmembrane transport carboxylic acid biosynthetic process succinate transmembrane transporter activity chorismate biosynthesis from 3-dehydroquinate shikimate metabolic process shikimate kinase activity activation of GTPase activity aromatic amino acid family biosynthetic process regulation of vesicle fusion voltage-gated anion channel activity Calcium signaling pathway regulation of anion transmembrane transport Rab GTPase binding stromule mitochondrial outer membrane chloroplast outer membrane GTPase activator activity formation of glycosidic bonds, GlycosylTransferases: GTnc Biosynthesis of amino acids endomembrane system integral component of membrane plastid intracellular protein transport magnesium ion binding intracellular transmembrane transport translation heme binding structural constituent of ribosome | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T029736 | scaffolds.min_1000bp | scaffold_3060064 | 34514 | 39508 | + |
Gene detail image
| Genome: |
| CRO_T029736 |
| CDS: |
| CRO_T029736 |
| Transcript: |
| CRO_T029736 |
| Protein: |
| CRO_T029736 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0008308 | voltage-gated anion channel activity | molecular_function |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0055085 | transmembrane transport | biological_process |
| GO:1903959 | regulation of anion transmembrane transport | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K15040 | VDAC2 | - | Calcium signaling pathway | ko04020 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01459.19 | Porin_3 | 4 | 268 | 2e-59 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 60.67845 | |
| SRR122236 | mixed tissue RA CK | 142.7925 | |
| SRR122237 | mixed tissue RB CK | 140.008 | |
| SRR122250 | callus YE 0.3mg/ml CK | 76.696 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 44.0948 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 72.9046 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 52.6384 | |
| SRR122242 | callus MeJA 100um 0h | 63.3007 | |
| SRR122246 | callus MeJA 100um 6h | 63.0874 | |
| SRR122240 | callus MeJA 100um 12h | 68.131 | |
| SRR122241 | callus MeJA 100um 24h | 94.2325 | |
| SRR122239 | flower CK 1 | 60.2315 | |
| SRR1271859 | flower CK 2 | 32.94405 | |
| SRR1144633 | healthy flowers CK | 37.0506 | |
| SRR1144634 | flowers PnWB infected | 55.4882 | |
| SRR122257 | hairy root CK | 64.1362 | |
| SRR122258 | hairy root MeJA 250um CK | 77.5377 | |
| SRR122259 | hairy root MeJA 250um 24h | 147.443 | |
| SRR122256 | hairy root RebH F CK | 61.1207 | |
| SRR122255 | hairy root TDCi CK | 55.8469 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 77.2241 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 135.457 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 68.4921 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 27.9109 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 43.9708 | |
| SRR1820238 | Hairy roots CK GUS 3 | 61.4387 | |
| SRR1820233 | Hairy roots CK GUS 4 | 62.8383 | |
| SRR1820326 | Hairy roots CK GUS 5 | 58.1995 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 191.071 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 74.6789 | |
| SRR122252 | immature leaf CK | 50.1018 | |
| SRR342023 | leaf CK 1 | 61.908 | |
| SRR342022 | leaf CK 2 | 46.46625 | |
| SRR342019 | leaf CK 3 | 43.64235 | |
| SRR342017 | leaf CK 4 | 34.39375 | |
| SRR1271857 | leaf CK 5 | 19.20305 | |
| SRR122251 | mature leaf CK | 64.8393 | |
| SRR648705 | root CK 1 | 157.2395 | |
| SRR1271858 | root CK 2 | 46.55105 | |
| SRR122254 | root CK 3 | 67.7017 | |
| SRR648707 | root MeJA 24h | 257.763 | |
| SRR648709 | root MeJA 24h DSN normalized | 232.575 | |
| SRR837772 | seedling CK | 50.54115 | |
| SRR122243 | sterile seedlings AE CK 1 | 60.9513 | |
| SRR122245 | sterile seedlings AE CK 2 | 132.105 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 61.0886 | |
| SRR122253 | stem CK | 78.7224 | |
| SRR646572 | shoots CK | 64.314 | |
| SRR647068 | shoots MeJA 6h 1 | 94.6241 | |
| SRR646596 | shoots MeJA 6h 2 | 86.60385 | |
| SRR646604 | shoots MeJA 24h | 91.23935 | |
| SRR924147 | suspension cells EX ORCA2 CK | 193.1385 | |
| SRR924148 | suspension cells EX ORCA3 CK | 164.2515 |