CRO_T030498's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T030498 | Domain of unknown function (DUF303) |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G34215 | 1.00E-90 | Domain of unknown function (DUF303) |
| Arabidopsis thaliana | AT4G34215 | 1.00E-90 | Domain of unknown function (DUF303) |
| Arabidopsis thaliana | AT3G53010 | 7.00E-76 | Domain of unknown function (DUF303) |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001411 | hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 tissue development plant organ development anatomical structure morphogenesis cellular response to stimulus regulation of response to stimulus response to organic substance response to bacterium Ubiquitin_Proteasome_system, DUB: JAMM defense response to other organism response to osmotic stress lipid binding single-organism cellular process response to stress regulation of cellular process Endocytosis MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3 adaptor: F-box transport regulation of transcription, DNA-templated | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T030498 | scaffolds.min_1000bp | scaffold_3057140 | 38465 | 41905 | - |
Gene detail image
| Genome: |
| CRO_T030498 |
| CDS: |
| CRO_T030498 |
| Transcript: |
| CRO_T030498 |
| Protein: |
| CRO_T030498 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE6 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03629.15 | SASA | 150 | 239 | 4.5e-11 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 46.7578 | |
| SRR122236 | mixed tissue RA CK | 17.79435 | |
| SRR122237 | mixed tissue RB CK | 15.602 | |
| SRR122250 | callus YE 0.3mg/ml CK | 13.479 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 60.4259 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 24.9851 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 15.0118 | |
| SRR122242 | callus MeJA 100um 0h | 9.08333 | |
| SRR122246 | callus MeJA 100um 6h | 18.0954 | |
| SRR122240 | callus MeJA 100um 12h | 18.0424 | |
| SRR122241 | callus MeJA 100um 24h | 10.8664 | |
| SRR122239 | flower CK 1 | 5.50696 | |
| SRR1271859 | flower CK 2 | 15.59775 | |
| SRR1144633 | healthy flowers CK | 15.52015 | |
| SRR1144634 | flowers PnWB infected | 38.35645 | |
| SRR122257 | hairy root CK | 85.9517 | |
| SRR122258 | hairy root MeJA 250um CK | 87.9653 | |
| SRR122259 | hairy root MeJA 250um 24h | 92.6235 | |
| SRR122256 | hairy root RebH F CK | 71.583 | |
| SRR122255 | hairy root TDCi CK | 83.6105 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 91.7022 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 60.1575 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 158.504 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 155.717 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 124.76 | |
| SRR1820238 | Hairy roots CK GUS 3 | 180.596 | |
| SRR1820233 | Hairy roots CK GUS 4 | 215.086 | |
| SRR1820326 | Hairy roots CK GUS 5 | 175.013 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 57.1799 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 54.8284 | |
| SRR122252 | immature leaf CK | 22.046 | |
| SRR342023 | leaf CK 1 | 38.74495 | |
| SRR342022 | leaf CK 2 | 30.00815 | |
| SRR342019 | leaf CK 3 | 32.6621 | |
| SRR342017 | leaf CK 4 | 33.51855 | |
| SRR1271857 | leaf CK 5 | 24.76515 | |
| SRR122251 | mature leaf CK | 13.2606 | |
| SRR648705 | root CK 1 | 174.2575 | |
| SRR1271858 | root CK 2 | 104.019 | |
| SRR122254 | root CK 3 | 27.3685 | |
| SRR648707 | root MeJA 24h | 190.0975 | |
| SRR648709 | root MeJA 24h DSN normalized | 236.694 | |
| SRR837772 | seedling CK | 54.1432 | |
| SRR122243 | sterile seedlings AE CK 1 | 21.8774 | |
| SRR122245 | sterile seedlings AE CK 2 | 18.1742 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 27.6687 | |
| SRR122253 | stem CK | 21.2479 | |
| SRR646572 | shoots CK | 14.2633 | |
| SRR647068 | shoots MeJA 6h 1 | 19.3642 | |
| SRR646596 | shoots MeJA 6h 2 | 17.9919 | |
| SRR646604 | shoots MeJA 24h | 10.442845 | |
| SRR924147 | suspension cells EX ORCA2 CK | 250.6125 | |
| SRR924148 | suspension cells EX ORCA3 CK | 254.134 |