CFinderADM001411's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 1.73E-05 | cazy family |
| tissue development | 2.16E-05 | GO:0009888 |
| plant organ development | 2.16E-05 | GO:0099402 |
| anatomical structure morphogenesis | 2.16E-05 | GO:0009653 |
| cellular response to stimulus | 2.16E-05 | GO:0051716 |
| regulation of response to stimulus | 2.59E-05 | GO:0048583 |
| response to organic substance | 4.03E-05 | GO:0010033 |
| response to bacterium | 5.55E-05 | GO:0009617 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 6.05E-05 | ubs family |
| defense response to other organism | 0.000146559 | GO:0098542 |
| response to osmotic stress | 0.000146559 | GO:0006970 |
| lipid binding | 0.000221594 | GO:0008289 |
| single-organism cellular process | 0.000967872 | GO:0044763 |
| response to stress | 0.001287373 | GO:0006950 |
| regulation of cellular process | 0.001305836 | GO:0050794 |
| Endocytosis | 0.001965313 | KEGG pathway |
| MAPK signaling pathway - plant | 0.001965313 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.006077966 | ubs family |
| transport | 0.007848927 | GO:0006810 |
| regulation of transcription, DNA-templated | 0.039674267 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003363 | AT5G04220 (3.00E-17) | SYT3|synaptotagmin 3 |
| CRO_T004222 | AT1G48790 (2.00E-66) | AMSH1|associated molecule with the SH3 domain of STAM 1 |
| CRO_T006809 | AT5G03280 (0) | CKR1|CYTOKININ RESISTANT 1; EIN2|ETHYLENE INSENSITIVE 2; ERA3|ENHANCED RESPONSE TO ABA3; ORE2|ORESARA 2; ORE3|ORESARA 3 |
| CRO_T030498 | AT4G34215 (1.00E-90) | Domain of unknown function (DUF303) |
| CRO_T031734 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000147 | Sulfur relay system tRNA modification lipid binding response to stress transferase activity regulation of transcription, DNA-templated | details |
| CFinderADM001110 | steroid binding skotomorphogenesis microtubule bundle formation detection of brassinosteroid stimulus anther wall tapetum cell differentiation regulation of seedling development negative regulation of cell death Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase ATP binding protein serine/threonine kinase activity positive regulation of flower development pollen exine formation brassinosteroid mediated signaling pathway MAP kinase activity response to UV-B protein phosphorylation leaf development Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family MAPK cascade NF-kappa B signaling pathway protein homodimerization activity protein heterodimerization activity defense response Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Plant hormone signal transduction endosome Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular | details |
| CFinderADM001215 | CAAX-protein geranylgeranyltransferase activity CAAX-protein geranylgeranyltransferase complex phosphogluconate dehydrogenase (decarboxylating) activity chromosome, centromeric region protein geranylgeranylation mitotic nuclear division diacylglycerol and triacylglycerol biosynthesis lipid binding NAD binding response to water deprivation response to auxin response to stress response to abscisic acid vacuolar membrane | details |
| CFinderADM001258 | mitochondrial protein processing protein import into mitochondrial intermembrane space protein complex assembly mitochondrial fusion cristae formation Transcription_related, Transcription factor: EIL oligopeptide transport ATP-dependent peptidase activity metalloendopeptidase activity MAPK signaling pathway - plant mitochondrial inner membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box transporter activity chloroplast thylakoid membrane transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001412 | wogonin metabolism baicalein degradation (hydrogen peroxide detoxification) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, DUB: JAMM nucleotide binding Glycosaminoglycan degradation ABC transporters hydrolase activity, acting on glycosyl bonds ATPase activity ATPase activity, coupled to transmembrane movement of substances Endocytosis membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box transmembrane transport carbohydrate metabolic process transport | details |
| CFinderADM001599 | mitochondrial pyruvate transport signal recognition particle, endoplasmic reticulum targeting signal recognition particle binding 7S RNA binding SRP-dependent cotranslational protein targeting to membrane diacylglycerol and triacylglycerol biosynthesis Protein export acid phosphatase activity lipid binding response to stress mitochondrial inner membrane dephosphorylation regulation of transcription, DNA-templated | details |
| CFinderADM001713 | Phenylpropanoid biosynthesis Cytochrome_P450, Cytochrome P450: CYP98A flavonoid 3'-monooxygenase activity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity heme binding chlorogenic acid biosynthesis II chlorogenic acid biosynthesis I transmembrane transporter activity lipid binding response to stress plant-type cell wall organization hydrogen peroxide catabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII peroxidase activity membrane plant-type cell wall response to oxidative stress oxidation-reduction process cellular oxidant detoxification extracellular region adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity iron ion binding phosphorylation transmembrane transport nucleotide binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM001830 | 3-methylthiopropanoate biosynthesis hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 acireductone dioxygenase [iron(II)-requiring] activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation lactoylglutathione lyase activity L-methionine biosynthetic process from methylthioadenosine phosphate ion transport inorganic phosphate transmembrane transporter activity Pyruvate metabolism Cysteine and methionine metabolism stromule thylakoid lumen dioxygenase activity endomembrane system oxidation-reduction process transmembrane transport iron ion binding chloroplast stroma | details |
| CFinderADM002101 | plant organ development anatomical structure morphogenesis tissue development cellular response to stimulus regulation of response to stimulus response to organic substance response to bacterium response to osmotic stress defense response to other organism single-organism cellular process regulation of cellular process MAPK signaling pathway - plant Transcription_related, Transcription factor: C2H2 transport Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002198 | Cytochrome_P450, Cytochrome P450: CYP90A anther wall tapetum cell differentiation brassinosteroid biosynthesis I brassinosteroid biosynthesis II glycerophosphodiester phosphodiesterase activity Brassinosteroid biosynthesis positive regulation of flower development pollen exine formation response to UV-B spliceosomal complex cellular transition metal ion homeostasis brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process metal ion transport mRNA splicing, via spliceosome lipid binding transition metal ion binding response to stress lipid metabolic process Spliceosome monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen iron ion binding heme binding integral component of membrane regulation of transcription, DNA-templated | details |
| CFinderADM002246 | phosphopyruvate hydratase complex signal peptidase complex Estrogen signaling pathway phosphopyruvate hydratase activity protein targeting to ER signal peptide processing FK506 binding chaperone-mediated protein folding glycolytic process protein peptidyl-prolyl isomerization diacylglycerol and triacylglycerol biosynthesis gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Protein export peptidyl-prolyl cis-trans isomerase activity lipid binding response to stress peptidase activity endoplasmic reticulum membrane magnesium ion binding Carbon metabolism regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |