CRO_T032900's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T032900 | MUTS-homologue |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G20475 | 0 | ATMSH5|MUTS-HOMOLOGUE 5 |
| Arabidopsis thaliana | AT4G02070 | 2.00E-33 | ATMSH6|MUTS HOMOLOG 6;MSH6-1|MUTS HOMOLOG 6-1 |
| Arabidopsis thaliana | AT3G24495 | 4.00E-21 | ATMSH7|MUTS HOMOLOG 7;MSH6-2|MUTS HOMOLOG 6-2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001831 | chiasma assembly meiotic mismatch repair involved in reciprocal meiotic recombination germ cell nucleus synaptonemal complex mismatch repair complex formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation damaged DNA binding mismatched DNA binding galactosyltransferase activity | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T032900 | scaffolds.min_1000bp | scaffold_3068521 | 37044 | 46651 | - |
Gene detail image
| Genome: |
| CRO_T032900 |
| CDS: |
| CRO_T032900 |
| Transcript: |
| CRO_T032900 |
| Protein: |
| CRO_T032900 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000795 | synaptonemal complex | cellular_component |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0010777 | meiotic mismatch repair involved in reciprocal meiotic recombination | biological_process |
| GO:0030983 | mismatched DNA binding | molecular_function |
| GO:0032300 | mismatch repair complex | cellular_component |
| GO:0043073 | germ cell nucleus | cellular_component |
| GO:0051026 | chiasma assembly | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05192.15 | MutS_III | 191 | 544 | 2.1e-24 |
| PF05190.15 | MutS_IV | 400 | 501 | 0.00027 |
| PF00488.18 | MutS_V | 595 | 786 | 2e-43 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0.0399428 | |
| SRR122236 | mixed tissue RA CK | 0.0936394 | |
| SRR122237 | mixed tissue RB CK | 0.1751295 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.570435 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0.426719 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0.586728 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.40531 | |
| SRR122242 | callus MeJA 100um 0h | 0.465881 | |
| SRR122246 | callus MeJA 100um 6h | 0.647094 | |
| SRR122240 | callus MeJA 100um 12h | 0.845698 | |
| SRR122241 | callus MeJA 100um 24h | 0.479132 | |
| SRR122239 | flower CK 1 | 0.0192826 | |
| SRR1271859 | flower CK 2 | 0.0057085 | |
| SRR1144633 | healthy flowers CK | 0.1728955 | |
| SRR1144634 | flowers PnWB infected | 0.1862765 | |
| SRR122257 | hairy root CK | 0.0245431 | |
| SRR122258 | hairy root MeJA 250um CK | 0.0371097 | |
| SRR122259 | hairy root MeJA 250um 24h | 0 | |
| SRR122256 | hairy root RebH F CK | 0.0289348 | |
| SRR122255 | hairy root TDCi CK | 0 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0.0820543 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 0.119753 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 0.0708865 | |
| SRR1820238 | Hairy roots CK GUS 3 | 0.118509 | |
| SRR1820233 | Hairy roots CK GUS 4 | 0.0513243 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0.0314454 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.0131815 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0.0791307 | |
| SRR122252 | immature leaf CK | 0.657874 | |
| SRR342023 | leaf CK 1 | 0.4027305 | |
| SRR342022 | leaf CK 2 | 0.976693 | |
| SRR342019 | leaf CK 3 | 1.227435 | |
| SRR342017 | leaf CK 4 | 1.003538 | |
| SRR1271857 | leaf CK 5 | 0.0158209 | |
| SRR122251 | mature leaf CK | 0.274025 | |
| SRR648705 | root CK 1 | 0.0395704 | |
| SRR1271858 | root CK 2 | 0 | |
| SRR122254 | root CK 3 | 1.39928 | |
| SRR648707 | root MeJA 24h | 0.0344868 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.0391566 | |
| SRR837772 | seedling CK | 0 | |
| SRR122243 | sterile seedlings AE CK 1 | 0.257132 | |
| SRR122245 | sterile seedlings AE CK 2 | 0.271002 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 0.238479 | |
| SRR122253 | stem CK | 0.0193246 | |
| SRR646572 | shoots CK | 0.3492745 | |
| SRR647068 | shoots MeJA 6h 1 | 0.624069 | |
| SRR646596 | shoots MeJA 6h 2 | 0.4042885 | |
| SRR646604 | shoots MeJA 24h | 0.6389715 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.304462 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0.0808064 |