TreatCFM001831's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chiasma assembly | 0.004548407 | GO:0051026 |
| meiotic mismatch repair involved in reciprocal meiotic recombination | 0.004548407 | GO:0010777 |
| germ cell nucleus | 0.008104434 | GO:0043073 |
| synaptonemal complex | 0.008104434 | GO:0000795 |
| mismatch repair complex | 0.008104434 | GO:0032300 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009419037 | cazy family |
| protein glycosylation | 0.013826019 | GO:0006486 |
| damaged DNA binding | 0.021542412 | GO:0003684 |
| mismatched DNA binding | 0.021542412 | GO:0030983 |
| galactosyltransferase activity | 0.021542412 | GO:0008378 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006904 | AT1G27120 (0) | Galactosyltransferase family protein |
| CRO_T008094 | - | - |
| CRO_T009659 | AT1G04650 (4.00E-21) | unknown protein |
| CRO_T012219 | AT3G50430 (1.00E-93) | unknown protein |
| CRO_T013559 | AT3G13677 (3.00E-11) | unknown protein |
| CRO_T022681 | AT1G15910 (2.00E-44) | FDM1|factor of DNA methylation 1; IDNL1|INVOLVED IN DE NOVO 2 (IDN2) - LIKE 1; IDP1|IDN2 PARALOG 1 |
| CRO_T029989 | AT2G46150 (5.00E-20) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T032900 | AT3G20475 (0) | ATMSH5|MUTS-HOMOLOGUE 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000640 | cellular iron ion homeostasis iron ion transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII polysaccharide catabolic process beta-amylase activity iron ion transmembrane transporter activity acyl-CoA hydrolysis starch degradation II cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM000677 | tRNA 3'-trailer cleavage, endonucleolytic 3'-tRNA processing endoribonuclease activity abscisic acid binding RNA secondary structure unwinding response to abscisic acid | details |
| TreatCFM001012 | alanine-glyoxylate transaminase activity Alanine, aspartate and glutamate metabolism identical protein binding pyridoxal phosphate binding glycine biosynthesis III arginine catabolic process to glutamate homogalacturonan biosynthesis pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB mitochondrion | details |
| TreatCFM001694 | Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII outer membrane-bounded periplasmic space clathrin adaptor complex Fanconi anemia pathway Lysosome cellular response to DNA damage stimulus cytochrome complex assembly DNA metabolic process | details |
| TreatCFM001916 | translation initiation factor binding regulation of translational initiation formation of translation preinitiation complex mRNA splicing, via spliceosome eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex spliceosomal complex eukaryotic 43S preinitiation complex | details |
| TreatCFM002042 | response to gibberellin G1/S transition of mitotic cell cycle formation of glycosidic bonds, GlycosylTransferases: GTnc galactosyltransferase activity seed development protein glycosylation response to cytokinin carbohydrate binding Plant hormone signal transduction | details |
| TreatCFM002043 | adenosine ribonucleotides de novo biosynthesis mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism Mismatch repair SNARE interactions in vesicular transport | details |
| TreatCFM002062 | Transcription_related, Transcription factor: BBR-BPC | details |
Expression profiles
 Show details about module gene expression profiling |