CFinderADM000122's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| flavonoid metabolic process | 2.71E-07 | GO:0009812 |
| UDP-glucosyltransferase activity | 1.23E-06 | GO:0035251 |
| secondary metabolite biosynthetic process | 4.17E-05 | GO:0044550 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 4.38E-05 | GO:0016709 |
| formate-tetrahydrofolate ligase activity | 5.29E-05 | GO:0004329 |
| Cytochrome_P450, Cytochrome P450: CYP81K | 0.000143566 | CYP450 family |
| folic acid-containing compound biosynthetic process | 0.000683311 | GO:0009396 |
| nitrate transport | 0.000683311 | GO:0015706 |
| response to nitrate | 0.000683311 | GO:0010167 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000805225 | cazy family |
| indole glucosinolate metabolic process | 0.001002096 | GO:0042343 |
| defense response to other organism | 0.001002096 | GO:0098542 |
| folate polyglutamylation | 0.001647996 | plantCyc |
| iron ion binding | 0.001762191 | GO:0005506 |
| heme binding | 0.002021224 | GO:0020037 |
| folate transformations II | 0.002270225 | plantCyc |
| tetrahydrofolate biosynthesis II | 0.002270225 | plantCyc |
| sesamin biosynthesis | 0.002588742 | plantCyc |
| dioxygenase activity | 0.024767187 | GO:0051213 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000494 | AT1G52810 (2.00E-32) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T002144 | AT1G22360 (2.00E-50) | AtUGT85A2|UDP-glucosyl transferase 85A2 |
| CRO_T003707 | AT1G22380 (1.00E-59) | AtUGT85A3|UDP-glucosyl transferase 85A3 |
| CRO_T006237 | - | - |
| CRO_T006604 | AT3G16210 (4.00E-18) | F-box family protein |
| CRO_T007160 | AT1G50480 (0) | THFS|10-formyltetrahydrofolate synthetase |
| CRO_T008795 | - | - |
| CRO_T009825 | AT2G23610 (1.00E-53) | ATMES3|METHYL ESTERASE 3 |
| CRO_T011432 | - | - |
| CRO_T017251 | AT5G50200 (4.00E-27) | NRT3.1|NITRATE TRANSPORTER 3.1; WR3|WOUND-RESPONSIVE 3 |
| CRO_T022708 | - | - |
| CRO_T023438 | - | - |
| CRO_T025497 | - | - |
| CRO_T030023 | - | - |
| CRO_T030998 | - | - |
| CRO_T031227 | AT3G26300 (2.00E-83) | CYP71B34|cytochrome P450, family 71, subfamily B, polypeptide 34 |
| CRO_T031278 | AT5G10600 (9.00E-105) | CYP81K2|cytochrome P450, family 81, subfamily K, polypeptide 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000005 | mannan endo-1,4-beta-mannosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Fructose and mannose metabolism monolayer-surrounded lipid storage body hydrolase activity, acting on ester bonds Phenylpropanoid biosynthesis proteolysis involved in cellular protein catabolic process lipid storage S-methyltransferase activity Transcription_related, Transcription factor: AP2 tricarboxylic acid cycle mannan catabolic process seed oilbody biogenesis glyoxysome response to freezing glyoxylate cycle peroxidase activity magnoflorine biosynthesis 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity catechol O-methyltransferase activity extracellular space Lysosome Transcription_related, Transcription factor: zf-HD metabolic process carbohydrate metabolic process cysteine-type endopeptidase activity membrane extracellular region serine-type carboxypeptidase activity triacylglycerol degradation response to stimulus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Starch and sucrose metabolism Fatty acid elongation lipase activity binding aleurone grain monooxygenase activity cellular oxidant detoxification single-organism metabolic process pectin catabolic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| CFinderADM000400 | Carbon metabolism Cytochrome_P450, Cytochrome P450: CYP76C aconitate hydratase activity L-aspartate biosynthesis L-aspartate degradation I magnoflorine biosynthesis superpathway of L-isoleucine biosynthesis I superpathway of L-threonine biosynthesis protein metabolic process glyoxylate cycle superpathway of aspartate and asparagine biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity L-aspartate:2-oxoglutarate aminotransferase activity L-glutamine biosynthesis III TCA cycle II (plants and fungi) cellular amino acid metabolic process single-organism metabolic process biosynthetic process 4 iron, 4 sulfur cluster binding peptidase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen pyridoxal phosphate binding metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |