CFinderADM000298's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 4-hydroxyphenylpyruvate biosynthesis | 1.29E-05 | plantCyc |
| superpathway of plastoquinol biosynthesis | 1.29E-05 | plantCyc |
| L-tyrosine:2-oxoglutarate aminotransferase activity | 1.50E-05 | GO:0004838 |
| rosmarinic acid biosynthesis I | 3.00E-05 | plantCyc |
| Transcription_related, Transcription factor: zf-HD | 7.61E-05 | TF family |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 8.35E-05 | plantCyc |
| cellular response to DNA damage stimulus | 9.01E-05 | GO:0006974 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.000130932 | plantCyc |
| homogalacturonan biosynthesis | 0.000180246 | plantCyc |
| cellular amino acid metabolic process | 0.000237247 | GO:0006520 |
| Base excision repair | 0.000286862 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00056036 | cazy family |
| hydrolase activity, acting on glycosyl bonds | 0.000617877 | GO:0016798 |
| biosynthetic process | 0.000857178 | GO:0009058 |
| Transcription_related, Transcription factor: C2H2 | 0.001713957 | TF family |
| Biosynthesis of amino acids | 0.002105492 | KEGG pathway |
| transferase activity, transferring glycosyl groups | 0.002891337 | GO:0016757 |
| pyridoxal phosphate binding | 0.003103249 | GO:0030170 |
| metabolic process | 0.016761243 | GO:0008152 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003032 | AT1G14440 (2.00E-15) | AtHB31|homeobox protein 31; FTM2|FLORAL TRANSITION AT THE MERISTEM2; ZHD4|ZINC FINGER HOMEODOMAIN 4 |
| CRO_T011234 | AT1G18580 (4.00E-26) | GAUT11|galacturonosyltransferase 11 |
| CRO_T014205 | - | - |
| CRO_T015294 | AT3G18630 (2.00E-80) | ATUNG|uracil dna glycosylase |
| CRO_T025669 | AT5G53970 (1.00E-112) | TAT7|tyrosine aminotransferase 7 |
| CRO_T031020 | AT1G49900 (4.00E-19) | C2H2 type zinc finger transcription factor family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000640 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) rosmarinic acid biosynthesis I sphingolipid metabolic process L-tyrosine:2-oxoglutarate aminotransferase activity Transcription_related, Transcription factor: NF-YB L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process Antigen processing and presentation hydrolase activity, acting on glycosyl bonds biosynthetic process Biosynthesis of amino acids transporter activity pyridoxal phosphate binding transport metabolic process oxidoreductase activity | details |
| CFinderADM000720 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis stipule development centrolateral axis specification adaxial/abaxial axis specification L-tyrosine:2-oxoglutarate aminotransferase activity animal organ development rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) cell proliferation 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process flower development biosynthetic process Biosynthesis of amino acids unfolded protein binding Transcription_related, Transcription factor: HB protein folding pyridoxal phosphate binding Ubiquitin_Proteasome_system, E3: RING DNA binding | details |
| CFinderADM000866 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis L-tyrosine:2-oxoglutarate aminotransferase activity rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) response to abiotic stimulus voltage-gated potassium channel activity cellular amino acid metabolic process potassium ion transmembrane transport biosynthetic process integral component of membrane response to stress Biosynthesis of amino acids anchored component of plasma membrane electron carrier activity pyridoxal phosphate binding cytosol DNA binding | details |
| CFinderADM001073 | riboflavin synthase complex 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis galacturonate binding 6,7-dimethyl-8-ribityllumazine synthase activity L-tyrosine:2-oxoglutarate aminotransferase activity rosmarinic acid biosynthesis I cytokinin dehydrogenase activity cell-cell signaling L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) cytokinins degradation flavin biosynthesis I (bacteria and plants) cytokinin metabolic process riboflavin biosynthetic process enzyme inhibitor activity lipid transport cellular amino acid metabolic process Riboflavin metabolism Transcription_related, Transcription factor: C2C2-Dof Zeatin biosynthesis cell wall modification negative regulation of catalytic activity biosynthetic process aspartyl esterase activity oxidoreductase activity, acting on CH-OH group of donors pectin catabolic process lipid binding pectinesterase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: C2H2 Biosynthesis of amino acids Pentose and glucuronate interconversions flavin adenine dinucleotide binding pyridoxal phosphate binding transport | details |
| CFinderADM001224 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity cytoskeleton-dependent intracellular transport protein localization regulation of microtubule-based process cellular response to DNA damage stimulus L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) ATP-dependent microtubule motor activity, plus-end-directed cellular amino acid metabolic process Base excision repair kinesin complex hydrolase activity, acting on glycosyl bonds root development biosynthetic process microtubule-based movement microtubule binding Biosynthesis of amino acids pyridoxal phosphate binding metabolic process cytosol | details |
| CFinderADM002049 | response to water organonitrogen compound biosynthetic process organic acid biosynthetic process mitochondrial transport L-leucine biosynthesis mitochondrial membrane 2-Oxocarboxylic acid metabolism response to stress oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus | details |
Expression profiles
 Show details about module gene expression profiling |