CFinderADM001073's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| riboflavin synthase complex | 5.38E-05 | GO:0009349 |
| 4-hydroxyphenylpyruvate biosynthesis | 6.57E-05 | plantCyc |
| superpathway of plastoquinol biosynthesis | 6.57E-05 | plantCyc |
| galacturonate binding | 7.94E-05 | GO:0048032 |
| 6,7-dimethyl-8-ribityllumazine synthase activity | 7.94E-05 | GO:0000906 |
| L-tyrosine:2-oxoglutarate aminotransferase activity | 0.00010584 | GO:0004838 |
| rosmarinic acid biosynthesis I | 0.000153156 | plantCyc |
| cytokinin dehydrogenase activity | 0.000369798 | GO:0019139 |
| cell-cell signaling | 0.000390605 | GO:0007267 |
| L-phenylalanine biosynthesis III (cytosolic, plants) | 0.000425542 | plantCyc |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.000475949 | plantCyc |
| cytokinins degradation | 0.000475949 | plantCyc |
| flavin biosynthesis I (bacteria and plants) | 0.000475949 | plantCyc |
| cytokinin metabolic process | 0.000876959 | GO:0009690 |
| riboflavin biosynthetic process | 0.001012059 | GO:0009231 |
| enzyme inhibitor activity | 0.001263491 | GO:0004857 |
| lipid transport | 0.00132117 | GO:0006869 |
| cellular amino acid metabolic process | 0.001474684 | GO:0006520 |
| Riboflavin metabolism | 0.001591311 | KEGG pathway |
| Transcription_related, Transcription factor: C2C2-Dof | 0.003110772 | TF family |
| Zeatin biosynthesis | 0.004431224 | KEGG pathway |
| cell wall modification | 0.004753458 | GO:0042545 |
| negative regulation of catalytic activity | 0.00496452 | GO:0043086 |
| biosynthetic process | 0.00496452 | GO:0009058 |
| aspartyl esterase activity | 0.005805563 | GO:0045330 |
| oxidoreductase activity, acting on CH-OH group of donors | 0.005805563 | GO:0016614 |
| pectin catabolic process | 0.005857579 | GO:0045490 |
| lipid binding | 0.006150311 | GO:0008289 |
| pectinesterase activity | 0.006239004 | GO:0030599 |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.007058339 | cazy family |
| Transcription_related, Transcription factor: C2H2 | 0.010403282 | TF family |
| Biosynthesis of amino acids | 0.011699696 | KEGG pathway |
| Pentose and glucuronate interconversions | 0.011699696 | KEGG pathway |
| flavin adenine dinucleotide binding | 0.018205912 | GO:0050660 |
| pyridoxal phosphate binding | 0.021296917 | GO:0030170 |
| transport | 0.044927969 | GO:0006810 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000141 | AT3G02140 (3.00E-21) | AFP4|ABI FIVE BINDING PROTEIN 4; TMAC2|TWO OR MORE ABRES-CONTAINING GENE 2 |
| CRO_T004495 | - | - |
| CRO_T005849 | AT1G21340 (3.00E-34) | Dof-type zinc finger DNA-binding family protein |
| CRO_T009964 | AT3G43270 (0) | Plant invertase/pectin methylesterase inhibitor superfamily |
| CRO_T012412 | AT2G44050 (3.00E-67) | COS1|COI1 SUPPRESSOR1; COS1|coronatine insensitive1 suppressor |
| CRO_T017998 | AT1G34370 (4.00E-22) | STOP1|sensitive to proton rhizotoxicity 1 |
| CRO_T019127 | AT1G75450 (3.00E-37) | ATCKX5|CYTOKININ OXIDASE 5; ATCKX6|CYTOKININ OXIDASE 6 |
| CRO_T024586 | AT3G61260 (7.00E-48) | Remorin family protein |
| CRO_T025669 | AT5G53970 (1.00E-112) | TAT7|tyrosine aminotransferase 7 |
| CRO_T029318 | - | - |
| CRO_T032159 | AT2G38540 (8.00E-19) | ATLTP1|LIPID TRANSFER PROTEIN 1 |
| CRO_T032743 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000270 | cutin transport petal epidermis patterning lipid transport response to salt stress lipid binding ATPase activity intracellular signal transduction ATPase activity, coupled to transmembrane movement of substances ATP binding transmembrane transport protein serine/threonine kinase activity plasmodesma protein phosphorylation | details |
| CFinderADM000298 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis L-tyrosine:2-oxoglutarate aminotransferase activity rosmarinic acid biosynthesis I Transcription_related, Transcription factor: zf-HD L-phenylalanine biosynthesis III (cytosolic, plants) cellular response to DNA damage stimulus 4-hydroxybenzoate biosynthesis I (eukaryotes) homogalacturonan biosynthesis cellular amino acid metabolic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on glycosyl bonds biosynthetic process Transcription_related, Transcription factor: C2H2 Biosynthesis of amino acids transferase activity, transferring glycosyl groups pyridoxal phosphate binding metabolic process | details |
| CFinderADM000573 | 6,7-dimethyl-8-ribityllumazine synthase activity riboflavin synthase complex Riboflavin metabolism riboflavin biosynthetic process flavin biosynthesis I (bacteria and plants) Transcription_related, Transcription factor: WRKY cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis S-adenosylmethionine-dependent methyltransferase activity trans-Golgi network vacuolar membrane endosome methylation transferase activity chloroplast stroma | details |
| CFinderADM000640 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis arachidonate biosynthesis IV (8-detaturase, lower eukaryotes) rosmarinic acid biosynthesis I sphingolipid metabolic process L-tyrosine:2-oxoglutarate aminotransferase activity Transcription_related, Transcription factor: NF-YB L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process Antigen processing and presentation hydrolase activity, acting on glycosyl bonds biosynthetic process Biosynthesis of amino acids transporter activity pyridoxal phosphate binding transport metabolic process oxidoreductase activity | details |
| CFinderADM000720 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis stipule development centrolateral axis specification adaxial/abaxial axis specification L-tyrosine:2-oxoglutarate aminotransferase activity animal organ development rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) cell proliferation 4-hydroxybenzoate biosynthesis I (eukaryotes) cellular amino acid metabolic process flower development biosynthetic process Biosynthesis of amino acids unfolded protein binding Transcription_related, Transcription factor: HB protein folding pyridoxal phosphate binding Ubiquitin_Proteasome_system, E3: RING DNA binding | details |
| CFinderADM000735 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding CST complex riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity Riboflavin metabolism riboflavin biosynthetic process cytokinins degradation flavin biosynthesis I (bacteria and plants) Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family cation binding single-stranded DNA binding phosphoprotein phosphatase activity oxidation-reduction process chloroplast stroma transferase activity | details |
| CFinderADM000866 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis L-tyrosine:2-oxoglutarate aminotransferase activity rosmarinic acid biosynthesis I L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) response to abiotic stimulus voltage-gated potassium channel activity cellular amino acid metabolic process potassium ion transmembrane transport biosynthetic process integral component of membrane response to stress Biosynthesis of amino acids anchored component of plasma membrane electron carrier activity pyridoxal phosphate binding cytosol DNA binding | details |
| CFinderADM000867 | L-histidine biosynthesis L-glutamine degradation I Biosynthesis of amino acids 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity phosphoribosylglycinamide formyltransferase activity oxo-acid-lyase activity transferase activity, transferring pentosyl groups imidazoleglycerol-phosphate synthase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I riboflavin synthase complex tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate mitochondrial proton-transporting ATP synthase complex assembly auxin efflux transmembrane transporter activity flavin biosynthesis I (bacteria and plants) Folate biosynthesis Riboflavin metabolism tetrahydrofolate biosynthesis II 'de novo' IMP biosynthetic process riboflavin biosynthetic process histidine biosynthetic process folic acid-containing compound biosynthetic process auxin homeostasis protein complex cellular amino acid biosynthetic process auxin polar transport auxin-activated signaling pathway ligase activity chloroplast embryo development ending in seed dormancy mitochondrial inner membrane Purine metabolism | details |
| CFinderADM000891 | auxin homeostasis mitochondrion organization auxin efflux transmembrane transporter activity Transcription_related, Transcription factor: C2C2-Dof auxin polar transport regulation of cellular process protein ubiquitination ubiquitin-protein transferase activity ligase activity Ubiquitin_Proteasome_system, E3: RING chloroplast envelope endoplasmic reticulum | details |
| CFinderADM000933 | chloroplast stroma riboflavin synthase complex phosphoribosylglycinamide formyltransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate pyruvate dehydrogenase (acetyl-transferring) activity acetyl-CoA biosynthetic process from pyruvate folic acid-containing compound biosynthetic process riboflavin biosynthetic process 'de novo' IMP biosynthetic process flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc amino acid binding unfolded protein binding response to stress ligase activity protein folding chloroplast thylakoid membrane cell wall Purine metabolism Protein processing in endoplasmic reticulum Carbon metabolism | details |
| CFinderADM000967 | riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity response to benzoic acid salicylic acid biosynthetic process regulation of salicylic acid metabolic process systemic acquired resistance Riboflavin metabolism plant-type hypersensitive response response to nitrate riboflavin biosynthetic process flavin biosynthesis I (bacteria and plants) Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: Trihelix benzoate biosynthesis I (CoA-dependent, β-oxidative) defense response to bacterium proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity ligase activity protein ubiquitination Ubiquitin_Proteasome_system, E3: RING transferase activity chloroplast stroma | details |
| CFinderADM001224 | 4-hydroxyphenylpyruvate biosynthesis superpathway of plastoquinol biosynthesis rosmarinic acid biosynthesis I L-tyrosine:2-oxoglutarate aminotransferase activity cytoskeleton-dependent intracellular transport protein localization regulation of microtubule-based process cellular response to DNA damage stimulus L-phenylalanine biosynthesis III (cytosolic, plants) 4-hydroxybenzoate biosynthesis I (eukaryotes) ATP-dependent microtubule motor activity, plus-end-directed cellular amino acid metabolic process Base excision repair kinesin complex hydrolase activity, acting on glycosyl bonds root development biosynthetic process microtubule-based movement microtubule binding Biosynthesis of amino acids pyridoxal phosphate binding metabolic process cytosol | details |
| CFinderADM002174 | nuclear-transcribed mRNA catabolic process riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity plastoquinol-9 biosynthesis I Riboflavin metabolism flavin biosynthesis I (bacteria and plants) riboflavin biosynthetic process large ribosomal subunit rRNA binding cytoplasmic translation ribosomal large subunit assembly rRNA processing preribosome, large subunit precursor unfolded protein binding protein folding cytosolic large ribosomal subunit nucleolus chloroplast envelope chloroplast stroma transferase activity structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |