CFinderADM000335's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of mRNA splicing, via spliceosome | 8.78E-06 | GO:0048025 |
| regulation of apoptotic process | 1.46E-05 | GO:0042981 |
| MAPK signaling pathway | 6.86E-05 | KEGG pathway |
| MAPK signaling pathway - yeast | 6.86E-05 | KEGG pathway |
| Wnt signaling pathway | 7.60E-05 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 9.39E-05 | kinase family |
| regulation of cell shape | 0.000124792 | GO:0008360 |
| Endocytosis | 0.00017498 | KEGG pathway |
| cytoplasm | 0.00027662 | GO:0005737 |
| peptidyl-serine phosphorylation | 0.000692375 | GO:0018105 |
| Transcription_related, Transcription regulator: SNF2 | 0.000917174 | TF family |
| lipid binding | 0.001606026 | GO:0008289 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.003296932 | ubs family |
| Ubiquitin_Proteasome_system, E3: RING | 0.016999371 | ubs family |
| binding | 0.033299627 | GO:0005488 |
| protein serine/threonine kinase activity | 0.034455888 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005860 | AT5G43320 (2.00E-147) | ckl8|casein kinase I-like 8 |
| CRO_T015017 | AT1G11100 (0) | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related |
| CRO_T018359 | AT2G33490 (1.00E-17) | hydroxyproline-rich glycoprotein family protein |
| CRO_T019753 | AT5G11850 (4.00E-120) | Protein kinase superfamily protein |
| CRO_T028548 | AT5G35180 (4.00E-60) | Protein of unknown function (DUF1336) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000433 | protein phosphatase 2A binding Transcription_related, Transcription factor: CAMTA regulation of dephosphorylation regulation of root meristem growth regulation of DNA endoreduplication regulation of cell division regulation of signal transduction Transcription_related, Transcription regulator: Jumonji protein phosphatase type 2A regulator activity Autophagy - animal lipid binding cytosol protein transport Endocytosis response to oxidative stress transferase activity | details |
| CFinderADM000870 | lipid binding nuclear pore cytoplasmic filaments posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery telomere tethering at nuclear periphery RNA export from nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore nuclear localization sequence binding protein import into nucleus plasma membrane RNA transport RNA binding | details |
| CFinderADM001030 | lipid binding Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase nuclear pore cytoplasmic filaments posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery telomere tethering at nuclear periphery RNA export from nucleus nucleocytoplasmic transporter activity RNA metabolic process structural constituent of nuclear pore nuclear localization sequence binding protein import into nucleus kinase activity Protein processing in endoplasmic reticulum RNA transport phosphorylation RNA binding | details |
| CFinderADM001308 | negative regulation of mRNA splicing, via spliceosome embryonic meristem initiation embryonic pattern specification regulation of apoptotic process cell fate specification Transcription_related, Transcription factor: CAMTA MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Wnt signaling pathway regulation of cell shape Endocytosis cytoplasm peptidyl-serine phosphorylation Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity binding | details |
Expression profiles
 Show details about module gene expression profiling |