CFinderADM000433's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein phosphatase 2A binding | 1.74E-05 | GO:0051721 |
| Transcription_related, Transcription factor: CAMTA | 2.22E-05 | TF family |
| regulation of dephosphorylation | 3.65E-05 | GO:0035303 |
| regulation of root meristem growth | 6.07E-05 | GO:0010082 |
| regulation of DNA endoreduplication | 6.07E-05 | GO:0032875 |
| regulation of cell division | 8.50E-05 | GO:0051302 |
| regulation of signal transduction | 0.00016 | GO:0009966 |
| Transcription_related, Transcription regulator: Jumonji | 0.000189301 | TF family |
| protein phosphatase type 2A regulator activity | 0.00022572 | GO:0008601 |
| Autophagy - animal | 0.000464656 | KEGG pathway |
| lipid binding | 0.001807311 | GO:0008289 |
| cytosol | 0.001943691 | GO:0005829 |
| protein transport | 0.002544298 | GO:0015031 |
| Endocytosis | 0.005447949 | KEGG pathway |
| response to oxidative stress | 0.005858305 | GO:0006979 |
| transferase activity | 0.031171624 | GO:0016740 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001803 | AT1G78280 (0) | transferases, transferring glycosyl groups |
| CRO_T002664 | - | - |
| CRO_T002789 | AT5G53000 (1.00E-113) | TAP46|2A phosphatase associated protein of 46 kD |
| CRO_T014777 | AT1G13340 (7.00E-61) | Regulator of Vps4 activity in the MVB pathway protein |
| CRO_T018359 | AT2G33490 (1.00E-17) | hydroxyproline-rich glycoprotein family protein |
| CRO_T023277 | AT1G33780 (2.00E-91) | Protein of unknown function (DUF179) |
| CRO_T024699 | AT5G13610 (8.00E-93) | Protein of unknown function (DUF155) |
| CRO_T028548 | AT5G35180 (4.00E-60) | Protein of unknown function (DUF1336) |
| CRO_T030901 | AT1G67310 (1.00E-33) | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000335 | negative regulation of mRNA splicing, via spliceosome regulation of apoptotic process MAPK signaling pathway MAPK signaling pathway - yeast Wnt signaling pathway Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family regulation of cell shape Endocytosis cytoplasm peptidyl-serine phosphorylation Transcription_related, Transcription regulator: SNF2 lipid binding Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING binding protein serine/threonine kinase activity | details |
| CFinderADM000870 | lipid binding nuclear pore cytoplasmic filaments posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery telomere tethering at nuclear periphery RNA export from nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore nuclear localization sequence binding protein import into nucleus plasma membrane RNA transport RNA binding | details |
| CFinderADM001017 | Fanconi anemia pathway CO2 fixation into oxaloacetate (anaplerotic) phosphoenolpyruvate carboxylase activity medium-chain-(S)-2-hydroxy-acid oxidase activity very-long-chain-(S)-2-hydroxy-acid oxidase activity long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity Carbon metabolism response to gamma radiation multicellular organism reproduction telomere maintenance via telomerase regulation of telomere maintenance regulation of DNA endoreduplication response to aluminum ion regulation of root meristem growth meiotic nuclear division regulation of cell division response to abiotic stimulus carbon fixation double-strand break repair via nonhomologous end joining L-glutamine biosynthesis III biological regulation Transcription_related, Transcription factor: HSF tricarboxylic acid cycle amino acid transmembrane transporter activity FMN binding amino acid transmembrane transport response to stress DNA repair | details |
| CFinderADM001030 | lipid binding Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase nuclear pore cytoplasmic filaments posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery telomere tethering at nuclear periphery RNA export from nucleus nucleocytoplasmic transporter activity RNA metabolic process structural constituent of nuclear pore nuclear localization sequence binding protein import into nucleus kinase activity Protein processing in endoplasmic reticulum RNA transport phosphorylation RNA binding | details |
| CFinderADM001308 | negative regulation of mRNA splicing, via spliceosome embryonic meristem initiation embryonic pattern specification regulation of apoptotic process cell fate specification Transcription_related, Transcription factor: CAMTA MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Wnt signaling pathway regulation of cell shape Endocytosis cytoplasm peptidyl-serine phosphorylation Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity binding | details |
| CFinderADM002075 | regulation of DNA endoreduplication regulation of root meristem growth regulation of cell division thioredoxin pathway Arginine and proline metabolism L-ascorbic acid binding Transcription_related, Transcription factor: C3H Transcription_related, Transcription factor: MYB oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen iron ion binding mitochondrion | details |
Expression profiles
 Show details about module gene expression profiling |