CFinderADM000365's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| defense response | 0.000110192 | GO:0006952 |
| U1 snRNA 3'-end processing | 0.000227008 | GO:0034473 |
| U5 snRNA 3'-end processing | 0.000227008 | GO:0034476 |
| nuclear polyadenylation-dependent mRNA catabolic process | 0.000227008 | GO:0071042 |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | 0.000238096 | GO:0043928 |
| nuclear polyadenylation-dependent tRNA catabolic process | 0.000238096 | GO:0071038 |
| nuclear polyadenylation-dependent rRNA catabolic process | 0.000238096 | GO:0071035 |
| exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000238096 | GO:0000467 |
| nuclear mRNA surveillance | 0.000282032 | GO:0071028 |
| AU-rich element binding | 0.000344894 | GO:0017091 |
| U4 snRNA 3'-end processing | 0.000370446 | GO:0034475 |
| nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 0.000370446 | GO:0034427 |
| salidroside biosynthesis | 0.000545161 | plantCyc |
| apigenin glycosides biosynthesis | 0.000846709 | plantCyc |
| genistin gentiobioside biosynthesis | 0.000846709 | plantCyc |
| luteolin glycosides biosynthesis | 0.000846709 | plantCyc |
| myricetin gentiobioside biosynthesis | 0.000846709 | plantCyc |
| kaempferol gentiobioside biosynthesis | 0.000948787 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000974235 | cazy family |
| nuclear exosome (RNase complex) | 0.0015615 | GO:0000176 |
| cytoplasmic exosome (RNase complex) | 0.0015615 | GO:0000177 |
| sesaminol glucoside biosynthesis | 0.00356991 | plantCyc |
| response to biotic stimulus | 0.003697775 | GO:0009607 |
| curcumin glucoside biosynthesis | 0.003988161 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.006134434 | cazy family |
| quercetin gentiotetraside biosynthesis | 0.006514722 | plantCyc |
| vindoline and vinblastine biosynthesis | 0.006514722 | plantCyc |
| NADH dehydrogenase (ubiquinone) activity | 0.014551272 | GO:0008137 |
| quercetin 7-O-glucosyltransferase activity | 0.014551272 | GO:0080044 |
| quercetin 3-O-glucosyltransferase activity | 0.014551272 | GO:0080043 |
| transferase activity, transferring acyl groups | 0.014551272 | GO:0016746 |
| flavonoid glucuronidation | 0.015021525 | GO:0052696 |
| flavonoid biosynthetic process | 0.015432826 | GO:0009813 |
| RNA degradation | 0.016858195 | KEGG pathway |
| transferase activity, transferring glycosyl groups | 0.018422713 | GO:0016757 |
| Plant hormone signal transduction | 0.038665363 | KEGG pathway |
| vacuole | 0.046856997 | GO:0005773 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001717 | AT2G30270 (7.00E-27) | Protein of unknown function (DUF567) |
| CRO_T010624 | AT4G11650 (4.00E-84) | ATOSM34|osmotin 34 |
| CRO_T011848 | AT4G37420 (1.00E-135) | Domain of unknown function (DUF23) |
| CRO_T013656 | AT1G78830 (2.00E-110) | Curculin-like (mannose-binding) lectin family protein |
| CRO_T013657 | AT1G78850 (8.00E-73) | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain |
| CRO_T015374 | AT5G50760 (2.00E-18) | SAUR55|SMALL AUXIN UPREGULATED RNA 55 |
| CRO_T015559 | AT4G25030 (3.00E-99) | unknown protein |
| CRO_T018703 | - | - |
| CRO_T021867 | AT3G07970 (2.00E-77) | QRT2|QUARTET 2 |
| CRO_T022100 | AT5G47950 (2.00E-45) | HXXXD-type acyl-transferase family protein |
| CRO_T022526 | AT3G12990 (5.00E-121) | RRP45a|ribonuclease PH45A |
| CRO_T024610 | AT1G07180 (0) | ATNDI1|INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE; NDA1|alternative NAD(P)H dehydrogenase 1 |
| CRO_T025109 | AT2G15480 (1.00E-65) | UGT73B5|UDP-glucosyl transferase 73B5 |
| CRO_T026232 | AT5G54490 (2.00E-25) | PBP1|pinoid-binding protein 1 |
| CRO_T030979 | AT5G49690 (3.00E-48) | UDP-Glycosyltransferase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000692 | retrograde vesicle-mediated transport, Golgi to ER intra-Golgi vesicle-mediated transport retrograde transport, endosome to Golgi small GTPase mediated signal transduction intracellular protein transport GTP binding intracellular Golgi apparatus | details |
| CFinderADM000931 | carboxylic acid biosynthetic process shikimate metabolic process shikimate kinase activity aromatic amino acid family biosynthetic process apigenin glycosides biosynthesis chorismate biosynthesis from 3-dehydroquinate genistin gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis sesaminol glucoside biosynthesis curcumin glucoside biosynthesis quercetin gentiotetraside biosynthesis Biosynthesis of amino acids flavonoid glucuronidation flavonoid biosynthetic process quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity magnesium ion binding plastid intracellular membrane-bounded organelle formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide binding | details |
| CFinderADM001802 | formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity Ubiquitin_Proteasome_system, E2: UBC endomembrane system cytoplasmic part ligase activity Protein processing in endoplasmic reticulum intracellular membrane-bounded organelle | details |
| CFinderADM001803 | Ras signaling pathway Ubiquitin_Proteasome_system, E2: UBC small GTPase mediated signal transduction Protein processing in endoplasmic reticulum ligase activity GTP binding transmembrane transport translation transferase activity structural constituent of ribosome intracellular | details |
| CFinderADM002033 | shikimate 3-dehydrogenase (NADP+) activity 3-dehydroquinate dehydratase activity chorismate biosynthesis from 3-dehydroquinate sesamin biosynthesis vindoline and vinblastine biosynthesis Biosynthesis of amino acids response to stress oxidation-reduction process transferase activity, transferring acyl groups oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity iron ion binding heme binding hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |