CFinderADM000498's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| serine O-acetyltransferase activity | 1.15E-05 | GO:0009001 |
| GPI anchor biosynthetic process | 3.43E-05 | GO:0006506 |
| cysteine biosynthetic process from serine | 3.43E-05 | GO:0006535 |
| L-cysteine biosynthesis I | 5.25E-05 | plantCyc |
| seleno-amino acid biosynthesis | 5.25E-05 | plantCyc |
| xylogalacturonan biosynthesis | 0.00010593 | plantCyc |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.000553321 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00072402 | cazy family |
| DNA replication | 0.000766633 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: U-box | 0.003343505 | ubs family |
| Protein processing in endoplasmic reticulum | 0.013023005 | KEGG pathway |
| Carbon metabolism | 0.015090224 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.018970079 | ubs family |
| hydrolase activity | 0.020325462 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007875 | AT5G44930 (1.00E-20) | ARAD2|ARABINAN DEFICIENT 2 |
| CRO_T017307 | AT1G08840 (0) | emb2411|embryo defective 2411 |
| CRO_T027084 | AT1G19310 (2.00E-66) | RING/U-box superfamily protein |
| CRO_T027225 | AT1G63110 (9.00E-36) | GPI transamidase subunit PIG-U |
| CRO_T032660 | AT5G56760 (5.00E-107) | ATSERAT1; 1|serine acetyltransferase 1; 1; SAT-52|SERINE ACETYLTRANSFERASE 52; SAT5|SERINE ACETYLTRANSFERASE 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000978 | Homologous recombination ATP-dependent helicase activity cellular process Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING nucleic acid binding nucleotide binding | details |
| CFinderADM001044 | response to endoplasmic reticulum stress vacuolar membrane protein disulfide isomerase activity mitochondrion production of siRNA involved in chromatin silencing by small RNA response to pH long-distance posttranscriptional gene silencing cell redox homeostasis response to oxidative stress protein folding transferase activity, transferring glycosyl groups cell-cell signaling production of siRNA involved in RNA interference transcription, RNA-templated regulation of signal transduction endoplasmic reticulum sphingolipid biosynthesis (plants) xylogalacturonan biosynthesis RNA-directed RNA polymerase activity 5S rRNA binding Protein processing in endoplasmic reticulum fatty-acyl-CoA binding NLS-bearing protein import into nucleus Sphingolipid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nuclear localization sequence binding translation defense response to fungus protein processing formation of translation preinitiation complex structural constituent of ribosome nuclear pore nucleoplasm protein transporter activity signal transduction translation initiation factor activity GTPase activity chloroplast RNA transport | details |
| CFinderADM001601 | snRNA binding sialylation sialyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc commitment complex nucleotide binding U12-type spliceosomal complex precatalytic spliceosome protein glycosylation mRNA binding viral nucleocapsid mRNA splicing, via spliceosome Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus Ubiquitin_Proteasome_system, E3: RING nucleic acid binding | details |
| CFinderADM001784 | UBC13-MMS2 complex response to iron ion root epidermal cell differentiation postreplication repair protein K63-linked ubiquitination serine O-acetyltransferase activity L-cysteine biosynthesis I seleno-amino acid biosynthesis cysteine biosynthetic process from serine formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ubiquitin protein ligase activity ligase activity Carbon metabolism transferase activity | details |
| CFinderADM001785 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase nuclear cap binding complex mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation serine O-acetyltransferase activity RNA cap binding primary miRNA processing mRNA cis splicing, via spliceosome L-cysteine biosynthesis I seleno-amino acid biosynthesis membrane coat cysteine biosynthetic process from serine structural molecule activity cytoplasm response to abscisic acid vesicle-mediated transport intracellular protein transport Spliceosome Carbon metabolism protein serine/threonine kinase activity | details |
| CFinderADM001898 | deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor Purine metabolism maintenance of mitotic sister chromatid cohesion Ctf18 RFC-like complex chromosome, centromeric region regulation of DNA replication chromatin DNA clamp loader activity nucleoplasm DNA replication Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum catalytic activity Ubiquitin_Proteasome_system, E3: RING nucleotide binding | details |
| CFinderADM002049 | response to water organonitrogen compound biosynthetic process organic acid biosynthetic process mitochondrial transport L-leucine biosynthesis mitochondrial membrane 2-Oxocarboxylic acid metabolism response to stress oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus | details |
| CFinderADM002155 | cellular response to heat DNA methylation on cytosine within a CHH sequence acetyl-CoA biosynthesis III (from citrate) superpathway of acetyl-CoA biosynthesis DNA (cytosine-5-)-methyltransferase activity serine O-acetyltransferase activity transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer cofactor binding C-5 methylation of cytosine Citrate cycle (TCA cycle) seleno-amino acid biosynthesis L-cysteine biosynthesis I cysteine biosynthetic process from serine chromatin binding Cysteine and methionine metabolism Plant hormone signal transduction Carbon metabolism metabolic process protein serine/threonine kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |