CFinderADM000978's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Homologous recombination | 2.43E-08 | KEGG pathway |
| ATP-dependent helicase activity | 0.000204625 | GO:0008026 |
| cellular process | 0.001103918 | GO:0009987 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.003790822 | ubs family |
| Protein processing in endoplasmic reticulum | 0.004991296 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.016288271 | ubs family |
| nucleic acid binding | 0.031125516 | GO:0003676 |
| nucleotide binding | 0.032175427 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011846 | AT1G20750 (0) | RAD3-like DNA-binding helicase protein |
| CRO_T021936 | AT4G00020 (0) | BRCA2(IV)|BREAST CANCER 2 like 2A; EDA20|EMBRYO SAC DEVELOPMENT ARREST 20; MEE43|MATERNAL EFFECT EMBRYO ARREST 43 |
| CRO_T027084 | AT1G19310 (2.00E-66) | RING/U-box superfamily protein |
| CRO_T031100 | - | - |
| CRO_T032433 | AT4G24610 (0) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000498 | serine O-acetyltransferase activity GPI anchor biosynthetic process cysteine biosynthetic process from serine L-cysteine biosynthesis I seleno-amino acid biosynthesis xylogalacturonan biosynthesis Glycosylphosphatidylinositol(GPI)-anchor biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc DNA replication Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Carbon metabolism Ubiquitin_Proteasome_system, E3: RING hydrolase activity | details |
| CFinderADM001601 | snRNA binding sialylation sialyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc commitment complex nucleotide binding U12-type spliceosomal complex precatalytic spliceosome protein glycosylation mRNA binding viral nucleocapsid mRNA splicing, via spliceosome Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus Ubiquitin_Proteasome_system, E3: RING nucleic acid binding | details |
| CFinderADM001898 | deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor Purine metabolism maintenance of mitotic sister chromatid cohesion Ctf18 RFC-like complex chromosome, centromeric region regulation of DNA replication chromatin DNA clamp loader activity nucleoplasm DNA replication Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum catalytic activity Ubiquitin_Proteasome_system, E3: RING nucleotide binding | details |
| CFinderADM002049 | response to water organonitrogen compound biosynthetic process organic acid biosynthetic process mitochondrial transport L-leucine biosynthesis mitochondrial membrane 2-Oxocarboxylic acid metabolism response to stress oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Transcription_related, Transcription factor: C2H2 Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum Golgi apparatus | details |
Expression profiles
 Show details about module gene expression profiling |