CFinderADM000577's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Toll and Imd signaling pathway | 2.36E-06 | KEGG pathway |
| protein K63-linked ubiquitination | 1.62E-05 | GO:0070534 |
| postreplication repair | 1.62E-05 | GO:0006301 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.000560407 | ubs family |
| ubiquitin protein ligase binding | 0.001194614 | GO:0031625 |
| ubiquitin protein ligase activity | 0.002559439 | GO:0061630 |
| ligase activity | 0.002559439 | GO:0016874 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.006505237 | ubs family |
| catalytic activity | 0.009330699 | GO:0003824 |
| metabolic process | 0.009378946 | GO:0008152 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001285 | AT4G01860 (0) | Transducin family protein / WD-40 repeat family protein |
| CRO_T010475 | AT1G08070 (6.00E-91) | EMB3102|EMBRYO DEFECTIVE 3102; OTP82|ORGANELLE TRANSCRIPT PROCESSING 82 |
| CRO_T022760 | AT1G70650 (2.00E-51) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T029679 | AT1G77060 (6.00E-94) | Phosphoenolpyruvate carboxylase family protein |
| CRO_T033771 | AT4G02790 (9.00E-21) | EMB3129|EMBRYO DEFECTIVE 3129 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000347 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination magnesium ion transmembrane transport magnesium ion transport Ubiquitin_Proteasome_system, E2: UBC magnesium ion transmembrane transporter activity ubiquitin protein ligase binding DNA-directed RNA polymerase activity nucleus ubiquitin protein ligase activity ligase activity Purine metabolism cytoplasm | details |
| CFinderADM000478 | Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair CCR4-NOT core complex negative regulation of translation nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay protein complex scaffold cytoplasmic mRNA processing body Basal transcription factors Ubiquitin_Proteasome_system, E2: UBC RNA degradation ubiquitin protein ligase binding helicase activity peptidase activity nucleus ligase activity ubiquitin protein ligase activity Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3: RING transferase activity | details |
| CFinderADM000617 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 mRNA surveillance pathway Toll and Imd signaling pathway protein K63-linked ubiquitination response to abiotic stimulus postreplication repair nucleic acid binding Ubiquitin_Proteasome_system, E2: UBC nucleotidyltransferase activity ubiquitin protein ligase binding translational initiation response to stress nucleus ligase activity translation initiation factor activity ubiquitin protein ligase activity RNA transport cytoplasm | details |
| CFinderADM000628 | Toll and Imd signaling pathway MAPK signaling pathway - fly isoleucyl-tRNA aminoacylation protein K63-linked ubiquitination postreplication repair regulation of translational fidelity isoleucine-tRNA ligase activity mRNA processing embryo sac development protein import into nucleus aminoacyl-tRNA editing activity nuclear envelope cytosol Ran GTPase binding rRNA processing Ubiquitin_Proteasome_system, E2: UBC Aminoacyl-tRNA biosynthesis ubiquitin protein ligase binding protein transporter activity signal transduction small-subunit processome ligase activity ubiquitin protein ligase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
| CFinderADM000756 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair transferase activity Basal transcription factors Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ubiquitin protein ligase activity ligase activity nucleus Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated zinc ion binding | details |
| CFinderADM000825 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination plant sterol biosynthesis iron-sulfur cluster assembly Ubiquitin_Proteasome_system, E2: UBC Steroid biosynthesis translational initiation mitochondrial matrix ubiquitin protein ligase binding ubiquitin protein ligase activity translation initiation factor activity ligase activity | details |
| CFinderADM000847 | NatB complex nucleoside-triphosphatase activity N-terminal peptidyl-methionine acetylation fruit morphogenesis negative regulation of anthocyanin metabolic process organ growth 5-carbamoylmethyl uridine residue modification regulation of abscisic acid-activated signaling pathway cellular response to abscisic acid stimulus regulation of auxin mediated signaling pathway Elongator holoenzyme complex positive regulation of cell proliferation tRNA wobble uridine modification regulation of leaf development cytoskeletal part microtubule cytoskeleton cell proliferation leaf morphogenesis peptide alpha-N-acetyltransferase activity hydroquinone:oxygen oxidoreductase activity lignin catabolic process single-organism cellular process copper ion binding apoplast response to oxidative stress Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated nucleotide binding regulation of transcription, DNA-templated | details |
| CFinderADM001533 | nucleus Toll and Imd signaling pathway postreplication repair isoleucyl-tRNA aminoacylation phenylpropanoid metabolic process protein K63-linked ubiquitination NADPH-hemoprotein reductase activity isoleucine-tRNA ligase activity regulation of translational fidelity RNA polymerase II transcription factor binding aminoacyl-tRNA editing activity cell differentiation Transcription_related, Transcription factor: C2C2-GATA transcription factor complex transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding RNA polymerase II regulatory region sequence-specific DNA binding cytosol Ubiquitin_Proteasome_system, E2: UBC ribosome biogenesis FMN binding ubiquitin protein ligase binding chromatin binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes response to abscisic acid ubiquitin protein ligase activity ligase activity endoplasmic reticulum membrane regulation of transcription, DNA-templated | details |
| CFinderADM001545 | detection of calcium ion regulation of calcium or calmodulin-mediated signal transduction in response to host modulation by symbiont of host calcium or calmodulin-mediated signal transduction Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 phosphopantetheine binding regulation of photomorphogenesis calcium-mediated signaling Ras signaling pathway homogalacturonan degradation fatty acid biosynthetic process protein binding 2-alkenal reductase [NAD(P)] activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding protein kinase activity protein phosphorylation | details |
| CFinderADM002295 | peptidyl-proline hydroxylation Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair Nicotinate and nicotinamide metabolism procollagen-proline 4-dioxygenase activity NAD/NADH phosphorylation and dephosphorylation Arginine and proline metabolism L-ascorbic acid binding Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity formation of glycosidic bonds, GlycosylTransferases: GTnc iron ion binding | details |
Expression profiles
 Show details about module gene expression profiling |