CFinderADM000628's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Toll and Imd signaling pathway | 1.15E-05 | KEGG pathway |
| MAPK signaling pathway - fly | 1.62E-05 | KEGG pathway |
| isoleucyl-tRNA aminoacylation | 4.61E-05 | GO:0006428 |
| protein K63-linked ubiquitination | 4.61E-05 | GO:0070534 |
| postreplication repair | 4.61E-05 | GO:0006301 |
| regulation of translational fidelity | 9.63E-05 | GO:0006450 |
| isoleucine-tRNA ligase activity | 0.000118674 | GO:0004822 |
| mRNA processing | 0.00017813 | GO:0006397 |
| embryo sac development | 0.00017813 | GO:0009553 |
| protein import into nucleus | 0.00017813 | GO:0006606 |
| aminoacyl-tRNA editing activity | 0.000186341 | GO:0002161 |
| nuclear envelope | 0.000407627 | GO:0005635 |
| cytosol | 0.000407627 | GO:0005829 |
| Ran GTPase binding | 0.000475381 | GO:0008536 |
| rRNA processing | 0.000528845 | GO:0006364 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.000560407 | ubs family |
| Aminoacyl-tRNA biosynthesis | 0.00079317 | KEGG pathway |
| ubiquitin protein ligase binding | 0.00098835 | GO:0031625 |
| protein transporter activity | 0.001488094 | GO:0008565 |
| signal transduction | 0.001714975 | GO:0007165 |
| small-subunit processome | 0.002022399 | GO:0032040 |
| ligase activity | 0.003630037 | GO:0016874 |
| ubiquitin protein ligase activity | 0.003630037 | GO:0061630 |
| nucleolus | 0.006165505 | GO:0005730 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.006505237 | ubs family |
| RNA binding | 0.020848468 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005461 | AT2G31660 (0) | EMA1|enhanced miRNA activity 1; SAD2|SUPER SENSITIVE TO ABA AND DROUGHT2; URM9|UNARMED 9 |
| CRO_T005652 | AT3G03710 (5.00E-05) | PDE326|PIGMENT DEFECTIVE 326; PNP|POLYNUCLEOTIDE PHOSPHORYLASE; RIF10|resistant to inhibition with FSM 10 |
| CRO_T022760 | AT1G70650 (2.00E-51) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T025788 | AT4G10320 (8.00E-75) | tRNA synthetase class I (I, L, M and V) family protein |
| CRO_T029114 | AT1G03060 (0) | SPI|SPIRRIG |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000236 | Mitophagy - animal MAPK signaling pathway - fly transcription factor TFIID complex cytosol THO complex part of transcription export complex GMP synthase activity GMP synthase (glutamine-hydrolyzing) activity Ubiquitin_Proteasome_system, E3 adaptor: DWD cell plate production of ta-siRNAs involved in RNA interference regulation of ethylene-activated signaling pathway GMP biosynthetic process cytokinin-activated signaling pathway mRNA export from nucleus L-tryptophan biosynthesis sphingolipid biosynthesis (plants) regulation of vesicle fusion activation of GTPase activity cytokinesis by cell plate formation DNA-templated transcription, initiation Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family nuclear envelope Insulin signaling pathway protein import into nucleus Rab GTPase binding exocyst jasmonic acid mediated signaling pathway Ran GTPase binding Basal transcription factors GTPase activator activity exocytosis translational initiation endomembrane system protein transporter activity small GTPase mediated signal transduction protein heterodimerization activity Endocytosis signal transduction translation initiation factor activity transferase activity, transferring glycosyl groups endosome intracellular protein transport Spliceosome | details |
| CFinderADM000347 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination magnesium ion transmembrane transport magnesium ion transport Ubiquitin_Proteasome_system, E2: UBC magnesium ion transmembrane transporter activity ubiquitin protein ligase binding DNA-directed RNA polymerase activity nucleus ubiquitin protein ligase activity ligase activity Purine metabolism cytoplasm | details |
| CFinderADM000478 | Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair CCR4-NOT core complex negative regulation of translation nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay protein complex scaffold cytoplasmic mRNA processing body Basal transcription factors Ubiquitin_Proteasome_system, E2: UBC RNA degradation ubiquitin protein ligase binding helicase activity peptidase activity nucleus ligase activity ubiquitin protein ligase activity Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3: RING transferase activity | details |
| CFinderADM000553 | MAPK signaling pathway - fly mitotic sister chromatid cohesion nuclear envelope protein import into nucleus Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family Transcription_related, Transcription regulator: SET Ran GTPase binding protein transporter activity signal transduction kinase activity phosphorylation Ubiquitin_Proteasome_system, E3: RING cytosol | details |
| CFinderADM000577 | Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ubiquitin protein ligase activity ligase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD catalytic activity metabolic process | details |
| CFinderADM000617 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 mRNA surveillance pathway Toll and Imd signaling pathway protein K63-linked ubiquitination response to abiotic stimulus postreplication repair nucleic acid binding Ubiquitin_Proteasome_system, E2: UBC nucleotidyltransferase activity ubiquitin protein ligase binding translational initiation response to stress nucleus ligase activity translation initiation factor activity ubiquitin protein ligase activity RNA transport cytoplasm | details |
| CFinderADM000627 | aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis MAPK signaling pathway - fly valine-tRNA ligase activity valyl-tRNA aminoacylation isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity mRNA processing embryo sac development protein import into nucleus Ran GTPase binding nuclear envelope cytosol rRNA processing protein transporter activity Ribosome biogenesis in eukaryotes signal transduction small-subunit processome ATP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleolus RNA binding | details |
| CFinderADM000756 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair transferase activity Basal transcription factors Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ubiquitin protein ligase activity ligase activity nucleus Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated zinc ion binding | details |
| CFinderADM000825 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination plant sterol biosynthesis iron-sulfur cluster assembly Ubiquitin_Proteasome_system, E2: UBC Steroid biosynthesis translational initiation mitochondrial matrix ubiquitin protein ligase binding ubiquitin protein ligase activity translation initiation factor activity ligase activity | details |
| CFinderADM001140 | isoleucyl-tRNA aminoacylation MAPK signaling pathway - fly isoleucine-tRNA ligase activity regulation of translational fidelity aminoacyl-tRNA editing activity protein import into nucleus nuclear envelope cytosol Ran GTPase binding Transcription_related, Transcription regulator: SET protein transporter activity Aminoacyl-tRNA biosynthesis signal transduction Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM001533 | nucleus Toll and Imd signaling pathway postreplication repair isoleucyl-tRNA aminoacylation phenylpropanoid metabolic process protein K63-linked ubiquitination NADPH-hemoprotein reductase activity isoleucine-tRNA ligase activity regulation of translational fidelity RNA polymerase II transcription factor binding aminoacyl-tRNA editing activity cell differentiation Transcription_related, Transcription factor: C2C2-GATA transcription factor complex transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding RNA polymerase II regulatory region sequence-specific DNA binding cytosol Ubiquitin_Proteasome_system, E2: UBC ribosome biogenesis FMN binding ubiquitin protein ligase binding chromatin binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes response to abscisic acid ubiquitin protein ligase activity ligase activity endoplasmic reticulum membrane regulation of transcription, DNA-templated | details |
| CFinderADM001602 | protein kinase CK2 complex MAPK signaling pathway - fly protein kinase regulator activity regulation of protein kinase activity nuclear envelope Ran GTPase binding protein import into nucleus protein transporter activity Ribosome biogenesis in eukaryotes signal transduction kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc phosphorylation | details |
| CFinderADM002295 | peptidyl-proline hydroxylation Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair Nicotinate and nicotinamide metabolism procollagen-proline 4-dioxygenase activity NAD/NADH phosphorylation and dephosphorylation Arginine and proline metabolism L-ascorbic acid binding Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity formation of glycosidic bonds, GlycosylTransferases: GTnc iron ion binding | details |
Expression profiles
 Show details about module gene expression profiling |