CFinderADM000644's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleoside-triphosphatase activity | 1.38E-05 | GO:0017111 |
| pseudouridine synthesis | 5.19E-05 | GO:0001522 |
| microtubule cytoskeleton | 5.63E-05 | GO:0015630 |
| cytoskeletal part | 5.63E-05 | GO:0044430 |
| tRNA processing | 9.85E-05 | GO:0008033 |
| pseudouridine synthase activity | 0.000137825 | GO:0009982 |
| Transcription_related, Transcription regulator: SNF2 | 0.000253097 | TF family |
| single-organism cellular process | 0.000431297 | GO:0044763 |
| Homologous recombination | 0.000485615 | KEGG pathway |
| RNA binding | 0.016973018 | GO:0003723 |
| nucleotide binding | 0.02889556 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008037 | AT1G34150 (9.00E-86) | Pseudouridine synthase family protein |
| CRO_T009221 | AT3G44730 (2.00E-52) | ATKP1|ARABIDOPSIS KINESIN-LIKE PROTEIN 1; KP1|kinesin-like protein 1 |
| CRO_T011667 | AT1G08600 (7.00E-33) | ATRX; CHR20|P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T016528 | - | - |
| CRO_T025881 | AT1G13360 (9.00E-22) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000593 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux pollen development auxin-activated signaling pathway auxin polar transport Plant-pathogen interaction calcium ion binding Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM000754 | strand invasion DNA recombinase assembly mitotic recombination response to ionizing radiation DNA topoisomerase activity endodeoxyribonuclease activity four-way junction DNA binding recombinase activity DNA-dependent ATPase activity single-stranded DNA binding double-stranded DNA binding Homologous recombination Plant-pathogen interaction calcium ion binding | details |
| CFinderADM000847 | NatB complex nucleoside-triphosphatase activity N-terminal peptidyl-methionine acetylation fruit morphogenesis negative regulation of anthocyanin metabolic process organ growth 5-carbamoylmethyl uridine residue modification regulation of abscisic acid-activated signaling pathway cellular response to abscisic acid stimulus regulation of auxin mediated signaling pathway Elongator holoenzyme complex positive regulation of cell proliferation tRNA wobble uridine modification regulation of leaf development cytoskeletal part microtubule cytoskeleton cell proliferation leaf morphogenesis peptide alpha-N-acetyltransferase activity hydroquinone:oxygen oxidoreductase activity lignin catabolic process single-organism cellular process copper ion binding apoplast response to oxidative stress Ubiquitin_Proteasome_system, E3 adaptor: DWD transcription, DNA-templated nucleotide binding regulation of transcription, DNA-templated | details |
| CFinderADM001045 | formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001046 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Endocytosis formation of glycosidic bonds, GlycosylTransferases: GTnc protein phosphorylation | details |
| CFinderADM001167 | trans-Golgi network endosome protein targeting glucose catabolic process phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II Transcriptional misregulation in cancers choline biosynthesis I nucleosome formation of glycosidic bonds, GlycosylTransferases: GTnc S-adenosylmethionine-dependent methyltransferase activity protein heterodimerization activity plant-type cell wall vacuolar membrane methylation integral component of membrane DNA binding | details |
| CFinderADM001479 | regulation of lipid metabolic process anion transmembrane transport inorganic phosphate transmembrane transporter activity Plant-pathogen interaction calcium ion binding Protein processing in endoplasmic reticulum plastid | details |
Expression profiles
 Show details about module gene expression profiling |