CFinderADM000656's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| syntaxin binding | 5.18E-06 | GO:0019905 |
| GARP complex | 3.74E-05 | GO:0000938 |
| Golgi to vacuole transport | 7.61E-05 | GO:0006896 |
| retrograde transport, endosome to Golgi | 0.000101384 | GO:0042147 |
| intracellular protein transport | 0.003746893 | GO:0006886 |
| Golgi membrane | 0.006404329 | GO:0000139 |
| Protein processing in endoplasmic reticulum | 0.007838449 | KEGG pathway |
| vacuolar membrane | 0.00965029 | GO:0005774 |
| endoplasmic reticulum | 0.018974364 | GO:0005783 |
| plasmodesma | 0.021481304 | GO:0009506 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003638 | AT4G19490 (2.00E-27) | ATVPS54|VPS54 HOMOLOG |
| CRO_T018698 | AT1G11905 (2.00E-34) | B-cell receptor-associated protein 31-like |
| CRO_T022973 | - | - |
| CRO_T026770 | AT1G08770 (6.00E-24) | PRA1.E|prenylated RAB acceptor 1.E |
| CRO_T029750 | AT5G45610 (1.00E-17) | SUV2|SENSITIVE TO UV 2 |
| CRO_T032906 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000552 | cytoplasm poly(A) RNA binding RNA processing RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc nucleus ATP-dependent RNA helicase activity | details |
| CFinderADM000666 | RNA degradation heterocyclic compound binding organic cyclic compound binding | details |
| CFinderADM000921 | signaling receptor activity detection of light stimulus cysteine-type peptidase activity Ubiquitin_Proteasome_system, DUB: ULP cellular protein modification process signal transduction cellular process proteolysis | details |
| CFinderADM000929 | Cell cycle - Caulobacter unfolded protein binding peptidyl-serine phosphorylation intracellular signal transduction protein folding intracellular protein transport ATP binding Protein processing in endoplasmic reticulum endoplasmic reticulum vacuolar membrane plasmodesma intracellular protein serine/threonine kinase activity | details |
| CFinderADM001000 | histone lysine methylation cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET Protein processing in endoplasmic reticulum endoplasmic reticulum membrane | details |
| CFinderADM001010 | cytosolic small ribosomal subunit intracellular protein transport vacuolar membrane Golgi apparatus endoplasmic reticulum plasmodesma structural constituent of ribosome Protein processing in endoplasmic reticulum Ribosome translation | details |
| CFinderADM001359 | ribonucleoside binding DNA-directed RNA polymerase activity intracellular protein transport Protein processing in endoplasmic reticulum vacuolar membrane transcription, DNA-templated plasmodesma endoplasmic reticulum DNA binding integral component of membrane | details |
| CFinderADM001448 | centrosome duplication interphase microtubule nucleation by interphase microtubule organizing center mitotic spindle assembly growth cortical microtubule organization response to nematode meiotic nuclear division gamma-tubulin complex equatorial microtubule organizing center gamma-tubulin binding microtubule minus-end binding phosphatidylinositol phosphate kinase activity RNA modification structural constituent of cytoskeleton 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation Inositol phosphate metabolism microtubule Ribosome plasmodesma translation binding structural constituent of ribosome | details |
| CFinderADM001626 | auxin homeostasis auxin efflux auxin efflux transmembrane transporter activity poly(A) RNA binding pollen development auxin-activated signaling pathway auxin polar transport RNA processing Plant-pathogen interaction RNA degradation cytoplasm ATP-dependent RNA helicase activity formation of glycosidic bonds, GlycosylTransferases: GTnc calcium ion binding transmembrane transport endoplasmic reticulum | details |
| CFinderADM001693 | plant-type primary cell wall biogenesis cellulose biosynthesis plant-type secondary cell wall biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process cellulose synthase (UDP-forming) activity cell wall organization trans-Golgi network endosome Ubiquitin_Proteasome_system, E3: RING plasmodesma nucleic acid binding nucleotide binding | details |
| CFinderADM001861 | response to stimulus transferase activity, transferring glycosyl groups cellular process intracellular protein transport intracellular part Protein processing in endoplasmic reticulum vacuolar membrane endoplasmic reticulum plasmodesma | details |
| CFinderADM001963 | Ribosome biogenesis in eukaryotes positive regulation of transcription from RNA polymerase I promoter maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex binding t-UTP complex PeBoW complex microtubule minus-end binding spindle assembly maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) HAUS complex spindle microtubule snoRNA binding 90S preribosome nucleoplasm preribosome, large subunit precursor maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
Expression profiles
 Show details about module gene expression profiling |