CFinderADM001963's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome biogenesis in eukaryotes | 2.66E-08 | KEGG pathway |
| positive regulation of transcription from RNA polymerase I promoter | 6.90E-06 | GO:0045943 |
| maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.90E-06 | GO:0000466 |
| ribonucleoprotein complex binding | 6.93E-06 | GO:0043021 |
| t-UTP complex | 1.48E-05 | GO:0034455 |
| PeBoW complex | 1.48E-05 | GO:0070545 |
| microtubule minus-end binding | 1.62E-05 | GO:0051011 |
| spindle assembly | 3.16E-05 | GO:0051225 |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.16E-05 | GO:0000463 |
| HAUS complex | 5.56E-05 | GO:0070652 |
| spindle microtubule | 5.56E-05 | GO:0005876 |
| snoRNA binding | 7.30E-05 | GO:0030515 |
| 90S preribosome | 7.70E-05 | GO:0030686 |
| nucleoplasm | 0.000246974 | GO:0005654 |
| preribosome, large subunit precursor | 0.000246974 | GO:0030687 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000257002 | GO:0000462 |
| small-subunit processome | 0.00104812 | GO:0032040 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.004683771 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T021463 | AT3G06530 (5.00E-34) | ARM repeat superfamily protein |
| CRO_T021464 | AT3G06530 (8.00E-175) | ARM repeat superfamily protein |
| CRO_T023452 | - | - |
| CRO_T026770 | AT1G08770 (6.00E-24) | PRA1.E|prenylated RAB acceptor 1.E |
| CRO_T026830 | AT1G50710 (8.00E-119) | 4-Aug|augmin subunit 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000552 | cytoplasm poly(A) RNA binding RNA processing RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc nucleus ATP-dependent RNA helicase activity | details |
| CFinderADM000656 | syntaxin binding GARP complex Golgi to vacuole transport retrograde transport, endosome to Golgi intracellular protein transport Golgi membrane Protein processing in endoplasmic reticulum vacuolar membrane endoplasmic reticulum plasmodesma | details |
| CFinderADM000666 | RNA degradation heterocyclic compound binding organic cyclic compound binding | details |
| CFinderADM000742 | microtubule minus-end binding spindle assembly spindle microtubule HAUS complex | details |
| CFinderADM001000 | histone lysine methylation cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET Protein processing in endoplasmic reticulum endoplasmic reticulum membrane | details |
| CFinderADM001448 | centrosome duplication interphase microtubule nucleation by interphase microtubule organizing center mitotic spindle assembly growth cortical microtubule organization response to nematode meiotic nuclear division gamma-tubulin complex equatorial microtubule organizing center gamma-tubulin binding microtubule minus-end binding phosphatidylinositol phosphate kinase activity RNA modification structural constituent of cytoskeleton 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation Inositol phosphate metabolism microtubule Ribosome plasmodesma translation binding structural constituent of ribosome | details |
| CFinderADM001626 | auxin homeostasis auxin efflux auxin efflux transmembrane transporter activity poly(A) RNA binding pollen development auxin-activated signaling pathway auxin polar transport RNA processing Plant-pathogen interaction RNA degradation cytoplasm ATP-dependent RNA helicase activity formation of glycosidic bonds, GlycosylTransferases: GTnc calcium ion binding transmembrane transport endoplasmic reticulum | details |
| CFinderADM001627 | nucleus preribosome, small subunit precursor PeBoW complex endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex binding CCR4-NOT complex U3 snoRNA binding COPII vesicle coat maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic 3'-5'-exoribonuclease activity nucleoplasm preribosome, large subunit precursor ribonucleoside binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ER to Golgi vesicle-mediated transport DNA-directed RNA polymerase activity RNA degradation intracellular protein transport Purine metabolism Ubiquitin_Proteasome_system, E3 adaptor: DWD GTPase activity GTP binding transcription, DNA-templated transferase activity nucleic acid binding | details |
| CFinderADM001628 | ribonucleoside binding DNA-directed RNA polymerase activity Purine metabolism preribosome, small subunit precursor nucleus PeBoW complex ribonucleoprotein complex binding maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) oxygen binding U3 snoRNA binding ribosomal protein import into nucleus transcription, DNA-templated protein import into nucleus, translocation maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) protein import into nucleus, docking nuclear periphery nuclear membrane NLS-bearing protein import into nucleus phosphatidate metabolism, as a signaling molecule nuclear localization sequence binding Ran GTPase binding preribosome, large subunit precursor nucleoplasm DNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) protein transporter activity GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding heme binding | details |
| CFinderADM001693 | plant-type primary cell wall biogenesis cellulose biosynthesis plant-type secondary cell wall biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process cellulose synthase (UDP-forming) activity cell wall organization trans-Golgi network endosome Ubiquitin_Proteasome_system, E3: RING plasmodesma nucleic acid binding nucleotide binding | details |
| CFinderADM001964 | Ribosome biogenesis in eukaryotes small-subunit processome Ubiquitin_Proteasome_system, E3 adaptor: DWD PeBoW complex preribosome t-UTP complex positive regulation of transcription from RNA polymerase I promoter maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribonucleoprotein complex binding CCR4-NOT complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3'-5'-exoribonuclease activity 90S preribosome RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay snoRNA binding nucleoplasm preribosome, large subunit precursor maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA processing RNA degradation transferase activity nucleic acid binding | details |
| CFinderADM001965 | Ribosome biogenesis in eukaryotes positive regulation of transcription from RNA polymerase I promoter t-UTP complex CCR4-NOT complex 90S preribosome RNA phosphodiester bond hydrolysis, exonucleolytic cellular component organization nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity snoRNA binding Regulation of actin cytoskeleton maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) single-organism cellular process RNA degradation small-subunit processome intracellular membrane-bounded organelle transferase activity nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |