CFinderADM000729's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of iron ion transport | 2.33E-11 | GO:0034757 |
| cellular response to sucrose stimulus | 2.33E-11 | GO:0071329 |
| cellular response to cold | 2.33E-11 | GO:0070417 |
| secondary growth | 2.33E-11 | GO:0080117 |
| regulation of chlorophyll catabolic process | 2.33E-11 | GO:0010271 |
| cellular response to abscisic acid stimulus | 3.88E-11 | GO:0071215 |
| regulation of meristem development | 5.98E-11 | GO:0048509 |
| leaf senescence | 1.37E-10 | GO:0010150 |
| regulation of seed germination | 1.83E-10 | GO:0010029 |
| cellular response to phosphate starvation | 4.53E-10 | GO:0016036 |
| protein histidine kinase binding | 6.81E-10 | GO:0043424 |
| phloem or xylem histogenesis | 1.15E-09 | GO:0010087 |
| peptidyl-histidine phosphorylation | 1.15E-09 | GO:0018106 |
| response to osmotic stress | 1.15E-09 | GO:0006970 |
| regulation of flower development | 1.15E-09 | GO:0009909 |
| intracellular | 2.09E-09 | GO:0005622 |
| phosphorelay sensor kinase activity | 4.29E-09 | GO:0000155 |
| signal transduction by protein phosphorylation | 6.04E-09 | GO:0023014 |
| phosphorelay signal transduction system | 1.70E-08 | GO:0000160 |
| defense response to bacterium | 4.10E-08 | GO:0042742 |
| Plant hormone signal transduction | 1.61E-06 | KEGG pathway |
| L-ascorbate degradation IV | 2.86E-06 | plantCyc |
| L-idonate catabolic process | 3.77E-06 | GO:0046183 |
| histamine N-methyltransferase activity | 5.92E-06 | GO:0046539 |
| Transcription_related, Transcription factor: C3H | 0.001530539 | TF family |
| Transcription_related, Transcription factor: Orphans | 0.001530539 | TF family |
| small GTPase mediated signal transduction | 0.001799007 | GO:0007264 |
| methylation | 0.011231547 | GO:0032259 |
| GTP binding | 0.012216787 | GO:0005525 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.015224297 | ubs family |
| oxidoreductase activity | 0.04115746 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003609 | AT1G69060 (4.00E-18) | Chaperone DnaJ-domain superfamily protein |
| CRO_T012297 | AT2G17820 (7.00E-24) | ATHK1|histidine kinase 1 |
| CRO_T015591 | AT4G22110 (6.00E-21) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T023924 | AT5G03230 (4.00E-20) | Protein of unknown function, DUF584 |
| CRO_T025654 | AT5G60860 (6.00E-121) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T026778 | AT2G41960 (2.00E-45) | unknown protein |
| CRO_T027553 | AT3G04580 (6.00E-12) | EIN4|ETHYLENE INSENSITIVE 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000730 | protein kinase regulator activity regulation of protein kinase activity protein serine/threonine kinase activity cellular response to glucose starvation maintenance of root meristem identity protein phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 NF-kappa B signaling pathway Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII protein autophosphorylation plant-type cell wall kinase activity ATP binding phosphorylation | details |
| CFinderADM000775 | metalloendopeptidase activity small GTPase mediated signal transduction Protein processing in endoplasmic reticulum intracellular GTP binding proteolysis Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001262 | L-ascorbate degradation IV L-idonate catabolic process myo-inositol transport myo-inositol:proton symporter activity carbohydrate transport plant-type vacuole membrane proton transport Transcription_related, Transcription factor: C3H 2-alkenal reductase [NAD(P)] activity oxidation-reduction process Ubiquitin_Proteasome_system, E3 adaptor: DWD transmembrane transport oxidoreductase activity | details |
| CFinderADM001347 | small GTPase mediated signal transduction GTP binding intracellular | details |
| CFinderADM001555 | sphingomyelin phosphodiesterase activity voltage-gated chloride channel activity Ras signaling pathway chloride transport cellulase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 regulation of anion transmembrane transport cellulose catabolic process unidimensional cell growth ion transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB small GTPase mediated signal transduction transporter activity GTP binding transmembrane transport | details |
| CFinderADM001810 | small GTPase mediated signal transduction intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002168 | histamine N-methyltransferase activity Ubiquitin_Proteasome_system, DUB: JAMM eukaryotic translation initiation factor 3 complex, eIF3m nuclear lumen translation initiation factor binding RNA polymerase II transcription cofactor activity pollen germination eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex mediator complex regulation of translational initiation formation of translation preinitiation complex regulation of transcription from RNA polymerase II promoter translation initiation factor activity embryo development ending in seed dormancy RNA transport methylation | details |
Expression profiles
 Show details about module gene expression profiling |