CFinderADM000775's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| metalloendopeptidase activity | 0.00151774 | GO:0004222 |
| small GTPase mediated signal transduction | 0.002159861 | GO:0007264 |
| Protein processing in endoplasmic reticulum | 0.007838449 | KEGG pathway |
| intracellular | 0.00826711 | GO:0005622 |
| GTP binding | 0.012326462 | GO:0005525 |
| proteolysis | 0.01548525 | GO:0006508 |
| Ubiquitin_Proteasome_system, E3: RING | 0.016982357 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005800 | - | - |
| CRO_T021209 | - | - |
| CRO_T021786 | AT2G26200 (8.00E-63) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T022331 | AT3G60300 (2.00E-76) | RWD domain-containing protein |
| CRO_T025654 | AT5G60860 (6.00E-121) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T033633 | AT4G20310 (3.00E-07) | Peptidase M50 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000729 | negative regulation of iron ion transport cellular response to sucrose stimulus cellular response to cold secondary growth regulation of chlorophyll catabolic process cellular response to abscisic acid stimulus regulation of meristem development leaf senescence regulation of seed germination cellular response to phosphate starvation protein histidine kinase binding phloem or xylem histogenesis peptidyl-histidine phosphorylation response to osmotic stress regulation of flower development intracellular phosphorelay sensor kinase activity signal transduction by protein phosphorylation phosphorelay signal transduction system defense response to bacterium Plant hormone signal transduction L-ascorbate degradation IV L-idonate catabolic process histamine N-methyltransferase activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription factor: Orphans small GTPase mediated signal transduction methylation GTP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD oxidoreductase activity | details |
| CFinderADM001179 | molybdopterin synthase complex carbohydrate metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-galactosidase activity glucan endo-1,3-beta-D-glucosidase activity Galactose metabolism metalloendopeptidase activity 4 iron, 4 sulfur cluster binding zinc ion binding metal ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: FAR1 Starch and sucrose metabolism Protein processing in endoplasmic reticulum proteolysis catalytic activity nucleic acid binding mitochondrion regulation of transcription, DNA-templated | details |
| CFinderADM001180 | pyrimidine deoxyribonucleotides de novo biosynthesis I dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process branched-chain amino acid catabolic process isovaleryl-CoA dehydrogenase activity thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors argininosuccinate metabolic process argininosuccinate synthase activity inositol hexakisphosphate binding tRNA methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family leucine catabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis II rRNA methyltransferase activity L-arginine biosynthesis II (acetyl cycle) L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) rRNA base methylation lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response fatty-acyl-CoA binding glucan endo-1,3-beta-D-glucosidase activity Valine, leucine and isoleucine degradation zinc ion binding transcription coactivator activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX L-valine degradation I tRNA methylation arginine biosynthetic process iron-sulfur cluster binding transcription from RNA polymerase II promoter pyrimidine ribonucleotides interconversion vindoline and vinblastine biosynthesis positive regulation of transcription, DNA-templated auxin-activated signaling pathway metalloendopeptidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3: RING single-organism metabolic process protein serine/threonine phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pyrimidine metabolism cell mitochondrial matrix Transcription_related, Transcription factor: bHLH protein dephosphorylation | details |
| CFinderADM001249 | Pwp2p-containing subcomplex of 90S preribosome nucleotide-excision repair snoRNA binding damaged DNA binding isomerase activity photosynthesis, light reaction maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) membrane part proteasome-mediated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: SKP1 small-subunit processome Photosynthesis Ribosome biogenesis in eukaryotes plastid protein folding Protein processing in endoplasmic reticulum | details |
| CFinderADM001280 | TFIIK complex cyclin-dependent protein kinase holoenzyme complex response to abiotic stimulus positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity cyclin-dependent protein serine/threonine kinase regulator activity positive regulation of transcription from RNA polymerase II promoter calcium ion transmembrane transport calcium-transporting ATPase activity Basal transcription factors integral component of plasma membrane intracellular membrane-bounded organelle Ubiquitin_Proteasome_system, E3: RING transcription, DNA-templated | details |
| CFinderADM001347 | small GTPase mediated signal transduction GTP binding intracellular | details |
| CFinderADM001810 | small GTPase mediated signal transduction intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001885 | NEDD8 transferase activity lignin metabolic process ATG1/ULK1 kinase complex protein neddylation autophagy plant-type secondary cell wall biogenesis Ubiquitin_Proteasome_system, E2: UBC Autophagy - animal brassinosteroid biosynthetic process unidimensional cell growth Steroid biosynthesis oxidoreductase activity, acting on CH-OH group of donors ubiquitin protein ligase binding Ubiquitin mediated proteolysis calmodulin binding flavin adenine dinucleotide binding ubiquitin protein ligase activity vacuolar membrane nucleotide binding | details |
| CFinderADM002079 | mRNA metabolic process mitotic sister chromatid cohesion gene expression Cell cycle - yeast single organism reproductive process regulation of gene expression large ribosomal subunit rRNA binding chromatin binding metalloendopeptidase activity intracellular part mRNA surveillance pathway cytosolic large ribosomal subunit nucleolus Ribosome proteolysis Ubiquitin_Proteasome_system, E3: RING translation binding structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |